LOCUS       XM_069949287            4439 bp    mRNA    linear   VRT 18-NOV-2024
DEFINITION  PREDICTED: Dendropsophus ebraccatus dicer 1, ribonuclease III
            (DICER1), transcript variant X3, mRNA.
ACCESSION   XM_069949287
VERSION     XM_069949287.1
DBLINK      BioProject: PRJNA1181002
KEYWORDS    RefSeq.
SOURCE      Dendropsophus ebraccatus (hourglass treefrog)
  ORGANISM  Dendropsophus ebraccatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Hylidae;
            Hylinae; Dendropsophini.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091466) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_027789765.1-RS_2024_11
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 11/13/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4439
                     /organism="Dendropsophus ebraccatus"
                     /mol_type="mRNA"
                     /isolate="aDenEbr1"
                     /db_xref="taxon:150705"
                     /chromosome="13"
                     /sex="female"
                     /tissue_type="whole body, brain, muscle, liver"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Vassar College, Poughkeepsie, New
                     York"
                     /lat_lon="41.684639 N 73.895553 W"
                     /collection_date="2018-03-28"
                     /collected_by="Justin Touchon, Erich Jarvis"
     gene            1..4439
                     /gene="DICER1"
                     /note="dicer 1, ribonuclease III; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:138770296"
     CDS             211..4353
                     /gene="DICER1"
                     /codon_start=1
                     /product="endoribonuclease Dicer isoform X2"
                     /protein_id="XP_069805388.1"
                     /db_xref="GeneID:138770296"
                     /translation="

MIETLSMAGLQLLTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNSGSGKTFIAVLLTKELSYQIRGDFHTSAKRTVFLVNSDKQVAQQVSAVRTHSDLKVGEYSSLEVVESWSKEKWDEEFVAHQILVMTCHIFLSVLKRKSLSLCKINLLVFDECHLAIQDHPYREIMKICEGCQTCPRILGLTASILNGKCDPRDLKEKIQKLEEILKSNAETATDLVVLDRYASQPCEIVLDCGPYHDKSGLYQRLLHELDDSLHFLDDCNIPIVSKERDSTSISKQILSDCRAVLLVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTILRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEDEDEEIEEKEKTETSFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLADTDRIKGFEEDLKTYKAIEKILRNKCSKSLDCGDTESDPIVDDDGLFPPYVLRQDDGSPRVTLNNAIGHINRYCARLPSDPFTHLAPKCKTREVSSALYQATLYLPINSPLRAPIVGPSMNCARLAERAVALICCKMLHQIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRNSYPKPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLTLQQLELITRLHQYIFSHILRLEKPALEFKPMAADAAYCVLPLNVVNDCGTLDIDFKFVEDIEKSEARTGIPSTQYSAENPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPEDFRYPNLDFGWKRSIDSKTFISSLSPPTANPVGAAAIPDHGAKLEAVAENHDQMSVNGPASCPKSPSILQAAHASDDLKVFNGVSCNGLTNGDGNVSPGSRSTCCKQLPVLSSTSLLLENIPIENQPVANSECTVSDNNATKPTSGGSPGPSASADSASVVTNGKCEHGPSNGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGSPSRMVVSIFDPPVNWLPPGYIVNQDKSSSEKWESNETTATSA"

     misc_feature    322..915
                     /gene="DICER1"
                     /note="DEXH-box helicase domain of endoribonuclease Dicer;
                     Region: DEXHc_dicer; cd18034"
                     /db_xref="CDD:350792"
     misc_feature    order(322..333,340..342,391..414,535..537,724..726,
                     817..819)
                     /gene="DICER1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350792"
     misc_feature    order(499..504,571..576,649..651,655..660,667..669,
                     742..750)
                     /gene="DICER1"
                     /note="nucleic acid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:350792"
     misc_feature    1009..1293
                     /gene="DICER1"
                     /note="Partner-binding domain of the endoribonuclease
                     Dicer; Region: Dicer_PBD; cd15903"
                     /db_xref="CDD:277191"
     misc_feature    order(1024..1029,1036..1038,1042..1047,1222..1227,
                     1234..1239,1246..1248,1255..1260,1267..1269)
                     /gene="DICER1"
                     /note="Trbp binding interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277191"
     misc_feature    1312..1893
                     /gene="DICER1"
                     /note="C-terminal helicase domain of the endoribonuclease
                     Dicer; Region: SF2_C_dicer; cd18802"
                     /db_xref="CDD:350189"
     misc_feature    order(1546..1554,1762..1764,1819..1821,1825..1827)
                     /gene="DICER1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350189"
     misc_feature    order(1774..1776,1780..1782,1855..1857,1861..1863)
                     /gene="DICER1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350189"
     misc_feature    2089..2355
                     /gene="DICER1"
                     /note="Dicer dimerization domain; Region: Dicer_dimer;
                     pfam03368"
                     /db_xref="CDD:460900"
     misc_feature    2857..3225
                     /gene="DICER1"
                     /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse
                     involved in cleaving dsRNA in the RNA interference
                     pathway. It generates dsRNAs which are approximately 20 bp
                     long (siRNAs), which in turn target hydrolysis of
                     homologous RNAs. PAZ domains are named...; Region:
                     PAZ_dicer_like; cd02843"
                     /db_xref="CDD:239209"
     misc_feature    order(3046..3048,3085..3087,3103..3105,3115..3117,
                     3169..3171,3193..3195,3199..3201)
                     /gene="DICER1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239209"
     misc_feature    4015..>4290
                     /gene="DICER1"
                     /note="Ribonuclease III family; Region: RIBOc; smart00535"
                     /db_xref="CDD:197778"
     misc_feature    order(4066..4071,4078..4083,4090..4092,4099..4104,
                     4111..4116,4120..4128,4156..4158)
                     /gene="DICER1"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238333"
ORIGIN      

ggagcccgtcagcccccgcatccttccgccgtgtggggtctcatgagcccggcctggccccgcgggtctaagaacctccaggacggctcataaacagctctgagggatgatgatgtcacagaaggtttcaagagttatcgcgtttgtgacgtctcaggctgaaatagaaagctgtgcccaccccctggctgcaatgatctaagtcactggatgatagagaccctcagcatggcaggcctgcagctcctgaccccggcctcctcacccatgggccctttctttggactgccctggcagcaggaggcaattcatgataatatatacacccctaggaaatatcaggtggagctgctggaagcagcattggaccacaatactatagtgtgtttgaactctggctcagggaagacgttcatcgctgtactacttactaaagagctgtcctatcagatccggggagacttccacacatccgccaagagaacagtgttcctggtcaactctgataaacaagttgcccagcaagtgtctgcagtccgcactcactcagatcttaaggtcggggaatattccagtctagaagtcgtggaaagttggtcgaaggaaaaatgggacgaagaatttgtggctcatcagattctggtgatgacttgtcacatcttcctcagtgtcctgaagaggaagagcctctccttatgcaagatcaacctcctggtgttcgatgagtgccacctcgccatccaggatcatccctatcgggagattatgaagatctgtgaaggttgccagacatgtccacgaattttaggactgaccgcctccatactgaacgggaaatgcgacccccgcgaccttaaagagaagatccagaaactggaggaaattctgaagagtaatgctgaaacggcaactgatctggtggttttagacaggtacgcctcccagccctgtgagatcgtactggactgtggtccctatcacgacaaaagcggactctatcagaggctcctgcatgaactggacgactcgctgcacttcctggatgactgcaacattcccattgtatctaaagagagagattcaacctccatctctaaacagatcctctctgactgccgggcggtcctgctcgtcctcggtccgtggtgtgctgacaaagttgccgggatgatggtgagggaactgcagaaatacattaagcacgagcaagaagagctgcaccggaaatttctgctgtttacagacaccatcctaagaaagatccacgctctgtgcgaggagcatttctcccctgcctccctcgacttgaaattcgtcacccccaaagtcataaagcttctggagatcctgcgcaagtacaagccctacgagcgacagcaatttgagagcgtagagtggtacaacaaccgcaaccaggataactatgtgtcgtggagtgactctgaggatgatgaagatgaggacgaggagatagaggagaaagagaagacagagaccagcttcccatcgcctttcaccaacatcctgtgcgggatcatctttgtggagcggagatacacagcagtcgtcttaaataggttgatcaaggaggctgggaagcaggacccagagctggcgtacataagcagcaacttcataactggacacggcattggaaagaaccagccccgaaacaagcagatggaagtggagtttagaaaacaggaggaggttcttcgaaagttcagagctcatgagaccaacctgctcatcgccaccagcattgtggaggagggggtggacatccccaaatgcaacttggttgtccgcttcgatctgccgacagaatacaggtcatacgttcagtccaaaggtcgggcccgggcccccatctccaactacatcatgttggcggacactgacagaatcaaggggttcgaggaggatctgaaaacctacaaagccatcgagaagatcctgaggaataaatgctccaaatcgctggattgtggtgacacggagtctgaccccattgtggatgacgatggactttttcccccatatgtgctcaggcaggatgacggcagccccagggtcaccctaaacaacgccattggccacatcaatcggtattgtgctcggctgcccagcgaccccttcacccacctcgctccaaaatgcaaaacccgggaggtgtccagcgctctgtaccaggcaactctttacctgccaatcaactccccactcagagcccccattgttggcccatccatgaactgcgccaggctcgccgaacgagcggtagctcttatatgctgcaagatgctgcaccagatcggtgagctggacgaccatttaatgccagtcggcaaggagacggtgaaatacgaggaggagctggatctacacgatgaggaagaaaccagtgtccccggccgaccaggctccaccaaaaggaggcaatgctaccctaaggctatccctgagtgtctaaggaacagttatccgaagccaggacagccgtgttacctgtatgtcataggaatggtgttgacgacccctctacccgatgaactgaacttcaggaggcggaagctgtatccccctgaagacacaactagatgcttcggcatcctgactgccaaacccatacctcagatcccgcacttccctgtctacacccgttccggagaagtgaccatatcgattgagctgaagaagtctggatttacattaactctgcagcagcttgagctcatcacccggctccaccagtatatattctctcacatccttcgtcttgagaaacctgcactagaattcaagcccatggcagccgacgctgcttattgtgttctacctctcaatgttgtgaatgactgcggcactttggatatagattttaagtttgtggaagatattgagaaatcagaagctcgtactggcattcctagtactcagtattcagccgagaatccttttatattcaagctagaagactaccaggatgcagtgatcattcccagatatcgcaattttgaccagcctcaccgattctacgtagctgatgtatacactgaccttactccactcagtaaattcccttccccagaatatgaaacgttcgctgaatattataaaacaaagtacaacctcgacttgacaaacctcaaccagccacttttggacgtcgaccacacctcatcacgactgaacctgctgactccgcggcacctgaatcagaaggggaaggctctccctttaagcagcgcagagaaaaggaaagccaagtgggaaagtttacagaacaaacagatcctggttccagaactatgtgctattcaccccatccccgcgtccttgtggaggaaagccgtgtgcttgccaagcattctgtatcgcctgcattgtctcctgacggcagaggagctgagagcccagacggcaaccgatgccggagttggggtaaagtcccttcctgaggatttccgatatcccaacttggatttcgggtggaaaaggtccatcgatagcaaaacgttcatctcgagcctcagcccccctactgccaacccagtgggcgcagctgcgatccccgaccatggtgctaaactggaggccgttgcagaaaaccatgaccaaatgtctgttaacggtccagcgtcctgtccaaaatctcccagcatcctccaggcagcacatgcgtcggatgacctcaaagtgttcaacggcgtctcctgtaacggtcttacgaatggcgatggcaacgtttccccagggagtcggtcgacttgctgcaaacaactacctgttctatcctctacctcattattgcttgagaatatacctatcgagaaccagcccgtggccaacagtgaatgtactgtgagtgacaataacgctaccaaacctacctcaggtgggagtcccggcccctcggccagcgcagactctgcttctgttgtgaccaatggaaagtgtgaacatgggccttccaacggatactcctcaaagactctcgggcccaatcctggtcttatcctgcaggccttgacgttgtctaatgccagcgatgggtttaatctggagcgtcttgaaatgttgggtgactcctttctgaaacacgccatcaccacctacctgttctgcacttaccctgacgcccacgagggtcggctttcttatatgagaagcaagaaggtcagtaactgtaacctttaccgtctcgggaagaagaaaggctccccaagccgcatggtcgtctctatatttgatccacccgtaaactggcttcctcctggatatattgtgaatcaggataaaagttcctctgagaagtgggaaagtaatgaaactactgctaccagcgcttagaattcctcggagatgcgatcttggactacctcattactaagcacctttatgaagacccccgccagcactccccgggggttctcact

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