GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-08-20 18:56:28, GGRNA.v2 : RefSeq release 230 (May, 2025)

LOCUS       XM_069376130            1729 bp    mRNA    linear   PLN 23-OCT-2024
DEFINITION  Cladosporium halotolerans uncharacterized protein (WHR41_07526),
            mRNA.
ACCESSION   XM_069376130
VERSION     XM_069376130.1
DBLINK      BioProject: PRJNA1175685
            BioSample: SAMN14329494
KEYWORDS    RefSeq.
SOURCE      Cladosporium halotolerans
  ORGANISM  Cladosporium halotolerans
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Dothideomycetes; Dothideomycetidae; Cladosporiales;
            Cladosporiaceae; Cladosporium.
REFERENCE   1  (bases 1 to 1729)
  AUTHORS   Gioti,A., Siaperas,R., Nikolaivits,E., Le Goff,G., Ouazzani,J.,
            Kotoulas,G. and Topakas,E.
  TITLE     Draft Genome Sequence of a Cladosporium Species Isolated from the
            Mesophotic Ascidian Didemnum maculosum
  JOURNAL   Microbiol Resour Announc 9 (18), e00311-20 (2020)
   PUBMED   32354980
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1729)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-OCT-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1729)
  AUTHORS   Siaperas,R., Gioti,A., Topakas,E. and Kotoulas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2024) IndBioCat, School of Chemical Engineering,
            National Technical University of Athens (NTUA), 9 Iroon
            Polytechniou str., Athens 15772, Greece
REFERENCE   4  (bases 1 to 1729)
  AUTHORS   Gioti,A., Siaperas,R., Nikolaivits,E., Le Goff,G., Ouazzani,J.,
            Kotoulas,G. and Topakas,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2020) Genetics, Hellenic Centre of Marine
            Research (HCMR), Proin Amerikaniki Vassi, P.O. Box 2214, Gournes,
            Heraklion, Crete 71500, Greece
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_027191483).
FEATURES             Location/Qualifiers
     source          1..1729
                     /organism="Cladosporium halotolerans"
                     /mol_type="mRNA"
                     /strain="TM138-S3"
                     /isolation_source="rock from coastal sea water"
                     /host="Didemnum maculosum"
                     /db_xref="taxon:1052096"
                     /chromosome="Unknown"
                     /geo_loc_name="Spain:Granada"
                     /lat_lon="36.719250 N 3.727528 W"
                     /collection_date="2017-03-05/2017-03-25"
     gene            1..1729
                     /locus_tag="WHR41_07526"
                     /db_xref="GeneID:96008968"
     CDS             72..1415
                     /locus_tag="WHR41_07526"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_069226791.1"
                     /db_xref="GeneID:96008968"
                     /db_xref="GO:0005509|GO"
                     /db_xref="GO:0005783|GO"
                     /db_xref="GO:0032469"
                     /db_xref="InterPro:IPR012879"
                     /db_xref="PFAM:PF07946"
                     /translation="
MAAIAKVLFGGGSPASSAAPSDADFADFATAASPLAPSHAASSLSSGAAAAASTTGSPSVYYSNEGRPYTAWYRVWERTSLADFYQELFIIPIILVIVLVNIVGTRANRSRAKKWASTYLPMLDSEFASVGFGGRKSLRVGDVKQDGIAQAVTGSTDVPADLLKEKSKSEYVAYATGRQNVAWLDIRISLYKRNNPLAWFGELATSFFTESFPAPAERVEATAYCFDGKEKTLLPMAPASKDSTYDGFVWAIVHKDKMRTLRDERYDISLTSTKDHPKLPQWATVMSESAEVTEAMLTPDLIKAVTDAGEDLEALIITDQPIDAPKKLDDLVPRKRIYLSMRLNPKPASTSLFATFLRLPDHLVSTAHFRPEALRKVRATREEEARKLRKLDDEEKAEERRVAAEKLKKEERDRRLGKMSAEEQRKFLQKEKEQENRKMTKKRTQRG"
     misc_feature    375..1385
                     /locus_tag="WHR41_07526"
                     /note="PAT complex subunit CCDC47; Region: CCDC47;
                     pfam07946"
                     /db_xref="CDD:462322"
ORIGIN      
tgcgtctcctcaattcttctccccacgttgcctctctgcacccgcacgtctgcagcagtcaaccgagcaacatggcggccattgcgaaggtcctcttcggaggcggttctcccgcctcctccgctgcgcccagcgacgccgacttcgccgacttcgcaaccgcagcctccccgctggcgccctcgcacgcagcttcctccctctcttccggagcggcggcggccgcatcaacgaccggatctccctcagtctactactccaatgagggccgcccatacaccgcgtggtaccgcgtgtgggagcgcacctcgctcgccgacttctaccaggagctcttcatcatcccgatcatcctcgtgatcgtgctggtcaacatcgtcggcacgcgcgccaaccgctcgcgcgcgaagaaatgggcctcgacctacctgcccatgctcgacagcgagttcgccagcgtcggcttcggcggccgcaagagcctccgtgtcggcgacgtcaagcaggacggcatcgcgcaagcagtcaccggcagcaccgacgtgcccgccgacctgctgaaggagaagagcaagagcgagtacgtcgcgtacgcgacgggccgccagaacgtcgcctggctggacatccgcatctcgctgtacaagcgcaacaacccgctggcgtggttcggcgagctggccacctccttcttcaccgagagcttccccgcgcccgcggagagggtcgaggccaccgcgtactgcttcgacggcaaggagaagacgctccttcccatggcgccggctagcaaggactctacgtacgacggcttcgtctgggcgatcgtgcacaaggacaagatgcgcacgctcagagacgagcgctacgacatctccctgacctcgaccaaggaccacccgaagctgccccagtgggccaccgtcatgagcgagagcgccgaagtgaccgaggccatgctcacgcccgacctcatcaaggccgtcaccgacgccggcgaggacctcgaggctctgatcatcaccgaccagcccatcgacgcccccaaaaaactcgacgacctcgtcccccgcaaacgcatctacctctccatgcgcctgaaccccaagcccgcctcgacctcgctgttcgcgaccttcctgcgcctgcccgaccacctcgtcagcaccgcgcacttccggcccgaagcgctgcgcaaggtgcgcgcgacgcgcgaggaagaggcgcgcaagctgcgcaagttggacgacgaggagaaggccgaggagcgccgcgtcgcggccgagaagctcaagaaggaggagcgcgatcgccggctgggcaagatgagcgccgaggagcagcgcaagttcctgcagaaggagaaggagcaggagaacaggaagatgacgaagaagaggacgcagaggggttagagggttggtttttgcccgagggggggaaagggttttcgatttcttgtatcgttggattttggggaggggaggggggaaaaggctgtgtatttgatgtatacatgattttgttggtagagcggaaagttgttgaaaatcaccggcaaggccaagggagatttgacgtctcctagtcggtcttgattggggagattcatggattgtgatttccgaacgtagcacagctaagtcgctgctctagtcaagtcagcgctttgcatggcatggcatatcctcttcaagccttcattgcatctctgaattaagtccacaaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]