2025-07-03 17:40:51, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_065508590 4733 bp mRNA linear INV 28-MAY-2024 DEFINITION PREDICTED: Calliphora vicina copper-transporting ATPase 1 (ATP7), mRNA. ACCESSION XM_065508590 VERSION XM_065508590.1 DBLINK BioProject: PRJNA1112357 KEYWORDS RefSeq. SOURCE Calliphora vicina (urban bluebottle blowfly) ORGANISM Calliphora vicina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Calliphoridae; Calliphorinae; Calliphora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_088783) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_958450345.1-RS_2024_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/22/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4733 /organism="Calliphora vicina" /mol_type="mRNA" /db_xref="taxon:7373" /chromosome="4" gene 1..4733 /gene="ATP7" /note="copper-transporting ATPase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:135957787" CDS 343..4161 /gene="ATP7" /codon_start=1 /product="copper-transporting ATPase 1" /protein_id="XP_065364662.1" /db_xref="GeneID:135957787" /translation="
MEQQMPFTTTAKHNEENLVELDTLGIMNNANTHKEIRLPIIGMTCQSCVRNIEGNIATKPGIITCRVELAENAGYFTYDSSQTTPSKIAYEIDEMGFECSYDENVNNGQTQQTNGEAYDKCLVRIIGMTCQSCVKNIEGNIGSKPGIKSIKVSLEDKQAEVEFEPAILKAQEVAEMIDDMGFEASVLDNNSSTNSAKNSPKVANKQKSLTPLTSPKKPNSANGHATALAIEDELLSKCFLHIRGMTCASCVATIERHCRKIYGIDSVLVALLAAKAEVKYNANVITPESIAKSITELGFPSELLEEPNSGEAEVEIEIKGMTCASCVNKIETHVGKLKGVTAATVTLLTKRGKFRYNTELTGPRNICEAIEQLGFEAHLLSGKDKMAHSYLEHKEEIRKWRTAFLISLIFGGPCMIAMIYFMAEMGKRGHANMCCIVPGLSMENLVMFLLSTPVQFFGGWHFYVQSYKAIKHGTTNMDVLISMVTTISYIYSVAVVIAAILMEQNSSPLTFFDTPPMLLIFISLGRWLEHIAKGKTSEALSKLLSLKAAEAVLVEISKDFEITSEKVISVDYVQRGDVLKVIPGAKVPVDGKVLYGHSTCDESLITGESMPVAKRKGAVVIGGSINQNGVLLISATHTGENTTLAQIVRLVEEAQTSKAPIQQLADKIAGYFVPFVVVVSSVTLIGWIIAGFIDPGLVPVAMEHKAHMDTNTIVVSYAFKCALSVLAIACPCALGLATPTAVMVATGTGAINGILVKGATALENAHKVKTVVFDKTGTITYGTPMTSKVIMFVKPAVCSLARALTIVGAAEANSEHPIASAIVRFSREMLSQESLGKTENFQAVPGCGIKVMVSHYDTALRQACNAEKIINFENSYRSHGHNLQQAPIQLENGVSITELITDTDETQRKLAAQQQQHLQLLQLDDNSSNTDNVGDVNAILANEINVLIGNREWMLRNAINVSSEINSAMTEEESKGHTAVLCALNGQLVCMFAVSDMVKPEAHLAVYTLKKMGIEVILLTGDNKNTAASIAREVGITRVFAEVLPSHKVAKIQSLQESGKRVAMVGDGVNDSPALAQADVGIAIAAGTDVAAEAADVVLMRNDLLDVVACLDLSRKTVKRIRYNFLFASMYNLLGIPLASGIFAPFGITLQPWMASVAMAASSVSVVCSSLLLKFYRKPNATSLRTAEYMQYVATSKEREPDQLSLHRGLEDLPRRRASSSSLLSRILLRSGSVKMDPNQDSLLSGDDSGDYIQAKIVKTKNIQDVTEMQKL"
polyA_site 4733 /gene="ATP7" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ttattcagtccaaagagcaaggaacgggaattttttttttggaaacggtagtgaggtgtagctgctcttaatggtgggcaataaaaaaaattagatattttccttttgaaaaatgattaaaattaattaatagagtgaaacttataaattgccattaatttaaacaaattttaagtgaaaaaaattaaaataaaaacccaaatattacaaaaaataaatagattaagaaaggtgatataaaaacgagaaagaaaaaggaaaaaattaaaattataaaagcaatgcactgtgaacaaagtagacgataagacaagcaatacagcaaaaacaacaacaaaaacaatggagcaacaaatgcctttcactaccacagcgaagcataatgaagaaaacctagtggaactggatacattgggcataatgaacaatgcgaatacgcacaaagaaatacgactgcctattataggcatgacatgtcaaagttgtgtaagaaacattgagggcaatattgccacaaaaccaggtattatcacatgcagggtggagctggccgaaaatgctggctactttacctacgatagctcacaaacaactccctcaaaaattgcctacgaaattgacgaaatgggctttgaatgctcatacgatgaaaatgtaaataatggacaaacacaacaaacaaatggtgaagcttatgacaaatgtctggtgaggattattggcatgacctgtcaaagttgtgtgaaaaatatcgagggtaatataggcagcaaaccgggcatcaagtcaatcaaggttagtttggaagacaaacaggctgaagtggaatttgagccagccatattgaaagcccaagaggtggccgaaatgattgatgatatgggtttcgaggcaagtgtgttggataataactctagtacaaattctgccaaaaatagtcccaaagtagcaaacaagcaaaagtctttaactcctctcacctcacccaaaaaaccgaattcagccaatggccatgccactgcattggccattgaggatgagctgttatccaagtgttttctgcacatacgtggtatgacttgtgccagttgtgtggctaccatagaaagacattgccgcaaaatctatggcatagacagtgtattggtggcattattggctgccaaggcggaagttaaatacaatgcaaatgtcattacacccgaaagtatagctaaatcgataacagaattgggttttccctcggagctgctagaagaacccaatagtggtgaggctgaggtagagatagaaattaagggcatgacttgtgcttcctgcgttaataaaatcgagactcatgtgggtaaactgaaaggtgtgacggctgccacggttactttattaacaaaaaggggcaaattccgctacaataccgaactcactggaccccgcaacatatgtgaagccatcgaacaattgggctttgaagcccatctactttccggcaaagacaaaatggcccacagttacttagagcacaaagaggagatacgcaaatggcgtaccgcctttcttatttctctcatctttggtggaccctgtatgattgccatgatctattttatggctgaaatgggcaaaagaggacatgccaatatgtgttgcatagtgccgggactgtcgatggaaaatctggtcatgtttttactctccacaccggtgcagttctttggtggttggcatttctatgtacagtcctacaaggccataaaacatggcaccaccaacatggatgtgttaatttccatggtgactaccatctcttatatttactcggtggcagtggttatagcggccatattaatggaacaaaactcttcgccattgacatttttcgatacaccacccatgttgctgatattcatatcactgggcagatggttggagcacatagccaagggtaaaacttcagaggctttgtccaagctgttgtctttgaaggcggccgaagcggttttggtggaaatctctaaggattttgaaatcacttcggaaaaagtgatttctgtggattatgtacaacgcggagatgttttgaaggttataccgggcgccaaagtgccagtggatggcaaggttttatatggccactcaacctgcgatgaatcgctgattaccggcgaatctatgccggtggctaaacgcaaaggtgctgtagttataggtggctccatcaaccaaaatggtgtacttttaatatcagccactcatactggtgagaatactacactggctcaaatagtgcgcttggtggaggaggctcaaacctctaaagcccccatacaacagttggccgataaaattgcgggctattttgtgccatttgtggtggtagtctcaagtgtgactctgataggctggataatagcgggtttcatagaccctggcttggtgccagtagccatggaacacaaggcccacatggacacaaacaccatagtggtgagctatgcatttaagtgtgctttaagcgttttggctatagcctgtccctgtgctttgggtttggctacacccacggccgtaatggtggctactggtacgggagccataaatggtattttggtaaaaggagccactgccttggaaaatgctcataaggttaaaactgtggtctttgataaaacgggcactattacctatggcacccccatgacttcaaaggtcattatgtttgtcaagcctgcggtgtgcagtttagctagagctctcactattgtaggagctgctgaagccaatagtgaacatcccatagcctcggccattgtacgattttccagggaaatgttgtctcaagaatctttgggtaaaactgaaaatttccaggctgttcctggctgtggtattaaagttatggtctctcattatgatacggccttaagacaagcttgcaatgctgaaaaaatcattaatttcgaaaatagttatcgttcacatggccataatctacaacaggctcccatccaactggaaaatggtgtttccattactgaacttataaccgatacagatgaaactcaacgtaaactagccgctcagcaacagcaacatttacaactgctacaattagatgataactcctctaacactgacaatgtgggtgatgttaatgctatcttggctaatgaaatcaatgtacttatcggtaatcgcgaatggatgctgcgtaatgccattaatgtttccagtgaaatcaatagtgccatgactgaggaggaatccaaaggtcatacggctgtattgtgtgctttgaatggtcagctggtgtgtatgtttgctgtgtcggatatggtaaagccagaggctcatttggcggtttacactttaaagaaaatgggcattgaagttatattgctgacgggagataataagaatacagcagctagtatagccagagaggtgggcataacccgtgtctttgctgaagttttgccctcacacaaggtggccaaaatccagagcttacaagagtctggcaaacgtgtggccatggtgggtgatggtgtcaatgacagtcctgctttggcacaagccgatgttggtattgctatagcggccggcacagatgtggctgctgaagcggccgatgtggtgctcatgcgtaatgatctcttagatgtggtggcctgtctagatttgtcgcgtaaaactgtaaagcgcatacgatacaacttcctctttgccagtatgtacaatcttttgggtatacccttggcctctggtatattcgctcccttcggcataaccctacagccctggatggcttctgtggccatggcggccagttcggtgtcggtggtgtgctcttcgctgctactgaaattctatcgcaaacccaatgcgacctctttacgcacggctgaatatatgcaatatgtggccacctctaaagaacgtgaaccagatcaactgtccttgcatagaggtttggaggatttacccagacgtcgtgcttccagctcgtccttgctatcgcgcattctgctacgctctggcagcgttaaaatggatcccaatcaagactctttgttgtccggtgacgatagtggtgattatatacaagcaaaaattgttaaaactaaaaatatacaagacgttacagaaatgcaaaaactatagactttttaaagaacgttttttttttgttctgctgaaccgtcatttattatacaataaggcaagcagtcattaaaacaaattatttgttgttattcatttaaaatatgaactgtttcatttttttattatcttttattaatatattaaataaattttccttatgtatttctattcctttcgaaaatttccttaattaattggaaactaatttgttaattttatgtttttgttaaattttttttttgttttttttttaaacatacaaatgcatcaaaagatatctaaaacaacactaagccaataattaactgtgaatatattaagattgatttaaatttattatattgtatttttgtgtatattgttgtattaacaactataaaatttagaaaaaaaaaacacttttgtaaatgaccagcaatgtttttccaggcatatgctcaaaaaaagaaaatacaaagtactatattattgttataaatcataaaaatatttttttatacgaatccttaaacatatataaacaaaaaaaaaataaagaccccataaccagtaaattgtaaaaagataaa
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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