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Previous release (v1)
2025-12-08 04:08:27, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_063640620 5593 bp mRNA linear PRI 17-JUL-2024
DEFINITION PREDICTED: Symphalangus syndactylus dapper homolog 1-like
(LOC134736837), transcript variant X9, mRNA.
ACCESSION XM_063640620
VERSION XM_063640620.1
DBLINK BioProject: PRJNA946760
KEYWORDS RefSeq.
SOURCE Symphalangus syndactylus (siamang)
ORGANISM Symphalangus syndactylus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hylobatidae; Symphalangus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_072427) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_028878055.3-RS_2024_07
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 07/16/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..5593
/organism="Symphalangus syndactylus"
/mol_type="mRNA"
/isolate="Jambi"
/db_xref="taxon:9590"
/chromosome="5"
/sex="male"
/cell_line="Jambi"
/cell_type="lymphoblastoid"
/tissue_type="blood"
gene 1..5593
/gene="LOC134736837"
/note="dapper homolog 1-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 33
long SRA reads"
/db_xref="GeneID:134736837"
CDS 3792..4430
/gene="LOC134736837"
/codon_start=1
/product="dapper homolog 1-like"
/protein_id="XP_063496690.1"
/db_xref="GeneID:134736837"
/translation="
MGRVWTNWFHRGHRNVGFAKSSSLKHRGPALQGLENGLPTVREKTRAGSKKCRFLDDLDTNKKLKKASSKGRKSGGRPEASLPGRPAGGGHRSGSRAHGHGREAVVAKPKHKRTDYPRWKSSAGISYEEVLRRARRGRRENVGLYPGPVPLPYASPYAYVASDSQYSAECESLFHSTVVDTSEDEQSNYTTNCFGDSESRVLKEMLAEDCIH"
misc_feature <3813..4388
/gene="LOC134736837"
/note="Region: Dapper; pfam15268"
/db_xref="CDD:464605"
polyA_site 5593
/gene="LOC134736837"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
ctctagccataactttttattgagaatgcataccatgtatttgcttattacatggttaagtagccaccttattcttcaataacacaaaattcaccactgaaaagaaacagtttgaaagaatgaatatgtttagattggatacctgcactggcttggatattgaagtgtatgtaaactttcagatgaatcaagatagaggtatatgtcagagctgaaagaactttgttgtttattatagttggtttagatctcttatatgcatttacatgagaactccagagtgtcttgggaaagtacagaaattagaccatagatgcaggaaaatcccttcactcactaaggactcaaatataatcaatactaatgtactagcaataattataaagtgtaggaaaatactctttccatagcattttattctccacgtgctgcaaattaaattacagacatatgcatctaatattaaactacttttgtacagtgctttcctctttgacacgctatttagagtttcttaaagtgacgaactgtttgttttgaaatatatatatttttgctgccacattcaactcactaagctatcaaaatgcatctttctcacccatgtttgctatgacacactggaatattaatcccaagaggaatatcaataaattcctcctccagaatagcaagtattaaaaggctcaacagtggagaagtgaaaaatccatacaggcaagtccataacggtaagatcctatacttgaagtgtcagaggcattgaaaccagagtgactccatcttgaatagcaactgggtaaaataaggctaagacctactgggctgcattcccaggaggttagtatgctaagtcacaaaacaaaacaggaggctgacacaagattcaggtcataaagaacttgatgataaaacaggatgcagcaaagaagctggccaaaacccaccaaaaccaagacggcaatgaaagtgacctctagtcatcctcactgctcattatatgctaattagaatacattagcatgctaaaaaacacccttcccagtgccatgaccgtttgcaaatgtcatggcaacatcggaaagttaccctatatggtctaaaaaggggaggaaccttcatttgttggaattgccacccctttcccggaatactcaggaataatccaccccttgtttagtatataatcaagaaataactataaaaatagccaaccagccgccctaggggctgctctgcctatggaatagccattttaaaaatttctttactttcttaataaacttgctttcacttcactctgtggacttgccccaaattctcccttgtgtgagatgcaagaaccctgtcttggagtctggatcagcaccccctttctggtaacagaaagaagaccctatactgtaaagcctaaaaataaataaataggtatttaaaataaaaacctgtagaatcaagattctttggcaggatttggcaacttttctgaggtgactggctttttagaaccaagataaattgcatagggtgagggttgcggagggaaaagtcagagaacaaaatcgaaagtactactctcagacgttaacatgcacacaaatcccagaggatcttgttataacgcaggttctgattgagttggtcaagggtgggatggcctgagattacctcttttttttttttttttgagatggagtcttgctctgttgcccaggctggagtgcagtggtgtgatcttggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcttccctagtagctgggactacaggcgtatgccaccatgcccggctaatttttgtatttttagtagagaaggggttttaccatgttggccacactagtctcaaactcctgacctcgtgatctgcccgccttggcccccgaaaatgctgggattacaggcgtgagccaccatgcccggcgagattatgcatttctattaagctcccaggtgctgctgatgctatgagtctatggacaactctttgtagcaaaaatctaaggtaaagaatttccaaagaaagtccgagtgtggcaggccaggtctcactaacgtggtgctccatgacaactgattcagcactgactgagtggttaagttaaatactaaaagctgaaagagccagagtgcttatacaaagggtggaatgtaacaaaagtccaccaagagttttgcttacgtctttcatgggtcttgaagcatgacaaggtaacaaaggaattcttaacaggacccatttagggttaaacaaattttattgagagtctgaagacactccctaggcctccacaaacaagtttactgggggtctggaggaactccccaaacctccatgatttaacaggagacaagataagggtaatcaccctagcacctggacccattagattaagtacatttattgaggctccagaggaaggtcttcaggactcagacctgttatagatggaaagaagtgaatcatttatgtcttttttttttttagcagtaaaacaaaccatttattactgcatatgtgttatattaaatttacacaatgatatataagaacacatactgtttatattatatagtaatttaacattaacaggaatatcaacacaagtactactcatgcacaaaacatgcataaagcaattttacacaatactgtttaccaaaatttttttcttaaaaaaacagcccttccacataggatcagcggtccaatctggactggattgcactaatatgttcaggtcaatgcttcggtggcatagcgctcagtgagcaattctgggattggagtcatgcccaagggttacttcattaatagcgaatgtctctgtgcccaaggaccaaaattttatcccaaaactaaatcctccaaggaatgaaaggttggactggctacaaatcagggagggaaaagaaggcatcaaaatgttggataaacggccccagaaggggttattaggcacagggcctaggcaccaagtgtggcaaaagtttttgtgaatccttttaaggtccctatccaggatgccatctctggatttaaggtctggcctccaagtcatgagtctagtaaaaagaacagttctgagaataaaaccgaatggggatacatctgagaaatgtagactatataaaaaactatagaatacaatgactgcccctcatacctacttcacactattgtatgtggtgcccctcgacaggaaaaccctcatggaggcactgccctgaagactcaaggagcaaatataaatccaaaaattccatccacttgaccttgggatcaaaagatcttatcccaataaaacttgaacatcaaaacctgtaccttgccggatgctcagaaagtttaaaataaaaaacagctggtaccacaaaactcactgtcaccaccattaaaacctcaatatttacttctaactagcaaaacgttctttaccttccattaaaggcactagcgtccatacgtgaagatgaaacaataatttacctcggttttatattttttaaaaaagcattccattaaagtattatacaaaaatgaaagcaccaccttttttattttggcaactagggagaagaaaaaaaaagacgctttctacaccaaagatgtcactctaaccgtcgtcatcagtttcaaagagccagaccgaaagcggaggatcttctttttgaggttatgtgaggccttaattttgacaaaggttttggcggggtagttgtgaaggtctggggccattaccgtttgaatgggcagagtctggacaaactggttccaccggggccacaggaacgtgggcttcgcgaagagctccagcctgaagcaccgcggcccagccctccaggggctggagaacggcttgcccaccgtcagggagaaaacgcgggccgggagcaagaagtgtcgcttcctggatgacttggatacaaataagaaactcaagaaagcctcctctaaggggaggaaaagcgggggcaggcccgaggctagtcttcccggcaggcccgcgggcgggggccacaggtcagggagcagggcgcatggccacggacgggaggcggtggtggccaaacctaagcacaagcgaactgactacccgcggtggaagtcttcggccgggatttcctacgaagaggtcctgaggagggcccggcggggtcgccgggagaatgtggggctgtaccccggccccgtgcctctgccttacgccagcccctacgcctacgtggctagtgactcccagtactcggccgagtgcgagtccctgttccactccaccgtggtggacaccagtgaggacgagcagagcaattacaccaccaactgcttcggggacagcgagtcgagggttctcaaggaaatgcttgctgaagactgcatacattgaaaaggccagagagtggcaccgtggagaaccaagcttggtgacgccctcaagacccagtgctgccagttgctgctgattcacttctccacagcaaaatccacaaagcagaccccctccaatgaagaggacagcagcgcttgcccagccaaggaaaagtgctgctcccagctctcgtttctgacctgtgtgaatggctgggttgtaaaaatctctgatgattatattggctgtccagctcaccggaatcagaacgaagatgcccgtcaggatgaagaggactcctgaagttcccagaaggtatgctttggccctctcgttagagcctgtgcactggacctgcttcatgccacagatgccaataagtagggcgatcaaggagagagcaacagccacacacatgagggcccgggctgtttccagggcaggcgggagagccaacaaggaactatagaacttgcattgcaaccggaccctggcttgtcggatgcagttcatccagagcccttcccagagcctctcaaagacaatgatgttgctgccaacaaaagctgatactctccactgaggcagaagggttgtggcaagagtccccaccatgccaaggaacccaagaaccagcccagcaatttgcaagggataaaatgccattgcctttactttgaagactggttcaattcggagtggtagaagatgctcaagatgtagaacgtggaagcctcttgagtctagagaagtctttgatgatgttcttcttggctgctgcccataacgttttagtccaaatcagtagctgtgactgaacttggcctaactagaagtacctgttgtaaatgcatattgccttttttcatacacattcatttctgtatggattatttactagtcttatataattgtttcccagccaataagaaggtagctaggggtgtgtcaagaaatactgcattcaagtttaggatttctcatattattattgccttagcaatgctgtaattaagtgtcaaagtttccattgtgaattgctaattacagagctgaaacttcctgtgtaaaaatcactctgatataaaagtgtaaatatatgtgttaagacacagccgaagacaatgccaaaaccttgtgagtttattggagagtaattaaaaaacattttggactttaaa
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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