2024-09-08 11:42:21, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_062919679 2979 bp mRNA linear PLN 07-FEB-2024 DEFINITION Colletotrichum destructivum Putative PAZ domain, Piwi domain, ribonuclease H-like superfamily, argonaute, linker 1 (CDEST_03520), partial mRNA. ACCESSION XM_062919679 VERSION XM_062919679.1 DBLINK BioProject: PRJNA1073607 BioSample: SAMN37882108 KEYWORDS RefSeq. SOURCE Colletotrichum destructivum ORGANISM Colletotrichum destructivum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum; Colletotrichum destructivum species complex. REFERENCE 1 (bases 1 to 2979) AUTHORS Lapalu,N., Simon,A., Lu,A., Plaumann,P.-L., Amselem,J., Pigne,S., Auger,A., Koch,C., Dallery,J.-F. and O'Connell,R.J. TITLE Complete genome of the Medicago anthracnose fungus, Colletotrichum destructivum, reveals a mini-chromosome-like region within a core chromosome JOURNAL bioRxiv (2023) REMARK DOI: 10.1101/2023.12.16.571984 REFERENCE 2 (bases 1 to 2979) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-FEB-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2979) AUTHORS Lapalu,N., Simon,A., Lu,A., Plaumann,P.-L., Amselem,J., Pigne,S., Auger,A., Koch,C., Dallery,J.-F. and O'Connell,R.J. TITLE Direct Submission JOURNAL Submitted (19-OCT-2023) SPE_BIOGER, INRAE, 22 place de l'agronomie, Palaiseau 91120, France COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_085897). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2979 /organism="Colletotrichum destructivum" /mol_type="mRNA" /strain="CBS 520.97" /host="Medicago sativa" /db_xref="taxon:34406" /chromosome="2" /geo_loc_name="Saudi Arabia" /collection_date="1994-08-01" gene <1..>2979 /locus_tag="CDEST_03520" /db_xref="GeneID:87940023" CDS 1..2979 /locus_tag="CDEST_03520" /codon_start=1 /product="Putative PAZ domain, Piwi domain, ribonuclease H-like superfamily, argonaute, linker 1" /protein_id="XP_062775730.1" /db_xref="GeneID:87940023" /translation="
MSSTGPTQQTRASAINMDGSKDGGSPTGGRSRSGSHASQQKAPNPFGPSMGFDPAKPQGGPEKEHQNTRIDPPPESFLNPGASPFIRRPGYNTAGKPVNLEVNQFRVKEWDDKKTIFQYDVTISPPPLKYNVVFKKCWESPAVQEMLKKYKCLWLQDGRKLAWSSVPINRGEERLKVDLDEGRPVRPNAKARDNTFYFVMKETKRINLAALEAYLTGKMDWDSSVLECMNFLDHLVRQYPSERLLSIKRNFYNERNKKSMELGVCLEVVKGVYSSVRMNQSFCNKIGRGLGLNVDVANTAFWKGNCPLHMFVRDFLGTCERKWQGLKPNDIAELLKPVRQKDQNGRSTFAMSEAFKHLRKLVKLRFSPKHRGKESWDKTYNIKAFAFGQQYGERGATADNITFVNNGEEMTIAQYFQKTYGVQIMFPNWPVVETAKAGFFPMEVCLIKAMQRYPYKLDPDQTAAMIKAAVTRPTQRKADIMDAKSQLAWKEDPYLRQYGVVFDDQMARTQGSLLEPPKIQYANNITSPMFSGRWDLRGKKFWVPNRQPLQSWGIVVLENACNKAAAQAFAQTFKQTYTGHGGKVAKDAVVIDSEIRNHNVADAIAKAYAQIKAYTKATPQLLFCVLRFNNAGSYERIKKSADCRFGLLTQCVLARHVEKNQGQYHSNVAMKVNAKLGGITCRIPHPSGPASKAPAFFKEVTMMIGVDVSHATPGIDAPSMAAMTMSMDQDATFYSAAVETNGYRVEMMSPINARNFLARLMPTWHKRMNHPAPPPHIIYFRDGVSEGQYSQVLEYEVETMKKLMQQKYQGQKQPKWTVIVATKRHHIRFFPQQGDKNGNPLPGTLLEREVCHPFWWDFYLCSHVAIQGTARPVHYTVLVDEAKMNPNDLQKMIYGQCYSYARSTTPVSLHPAIYYADLACGRARAHENIATSQGFRSGPKAAEMVEEYGARGQSMFENERPTEAMQLLPLGGGGPDADPQATEMFKGTMWYI"
ORIGIN
atgtcttccaccggacctacccagcagacccgcgcttctgccatcaacatggacggatccaaagatggcggctcccccaccggcggtcgatcccgctccggctcccacgcctcgcaacagaaggccccgaaccctttcggtccttccatgggattcgaccctgccaagcctcagggtggtcccgagaaggaacaccagaacacccgcatcgacccgcctcccgagtcgtttctcaaccctggcgcttctcccttcattcggagacccggctacaacaccgccggtaagccagtcaacctggaggtgaaccagttccgtgtcaaagagtgggatgacaagaagaccatctttcaatacgatgtcaccatctccccgcctcccttgaagtacaatgttgtcttcaagaagtgttgggagtctccagccgtccaagagatgcttaagaaatacaagtgtctttggctgcaagatggtcgaaagctcgcttggtcctcggttcccatcaaccgtggagaggagcgcctcaaggtcgatctcgatgagggaaggcctgtgcgacccaatgccaaggcccgcgacaataccttctacttcgtgatgaaggaaaccaaaaggatcaatctggctgcccttgaggcctatctcaccggcaaaatggattgggacagctccgttttggagtgcatgaacttccttgaccaccttgttcgacagtatccgagcgagcgtttgttgtctatcaagcgcaacttttacaacgagcgcaacaaaaagagcatggaactcggcgtctgcttggaggttgtgaagggtgtttactcttcggtccggatgaaccagtcattctgcaacaagattggccgcggactcggtctgaacgttgatgtcgccaacactgccttctggaagggaaactgcccgcttcacatgttcgtccgagactttctgggaacttgtgaacgaaagtggcagggcctgaagcctaacgacatcgccgagctcctcaagcccgttcgccagaaggaccagaacggccgatccaccttcgccatgtcggaggcgttcaagcatcttcgcaagctggtcaagctccgcttctcgcccaagcaccgtggcaaggaaagctgggacaagacgtataacatcaaggctttcgcttttggtcagcagtacggcgagcggggtgccaccgcagacaacattaccttcgtcaacaatggcgaagaaatgaccattgcccagtacttccagaagacatacggcgtgcagattatgttccccaactggcctgtggttgagacagcaaaggccggcttctttccgatggaggtttgtctcatcaaagccatgcagcggtacccctacaagctggaccccgatcagactgctgccatgatcaaggctgcggtcactcggccaacccagcgcaaggccgacatcatggatgcaaagagtcagctggcgtggaaggaagacccctaccttcgccaatacggcgtggtgtttgatgatcagatggctcgaacccaaggctccctgctggagcctcccaagatccagtacgcaaacaacatcacaagcccaatgttctctggccgctgggatctgcgtggcaagaagttctgggttcccaaccggcagcccctccagtcctggggtattgtggttctggagaacgcatgtaacaaggccgccgcccaggcctttgcgcaaacgttcaagcagacatacaccggccacggcggcaaggttgccaaggacgcagtcgtcattgacagtgagatccgcaaccacaacgttgccgatgccattgcaaaggcatacgcgcagataaaggcctacacgaaggccaccccgcagcttctcttctgcgtgttgaggttcaacaacgctgggtcctacgagcgcatcaagaaatctgctgattgccgtttcggtcttttgacccagtgcgttcttgcgcgtcatgtcgagaagaaccaggggcagtaccactccaacgtggccatgaaggtcaacgccaagctcggcggcatcacctgtcgcatccctcatccgtcgggtccggcaagcaaggcgcctgcctttttcaaagaggtcaccatgatgattggcgttgatgtgtcccacgccacgcctggtatcgacgccccttcgatggccgcgatgactatgtccatggatcaggacgcaacgttctactccgcagccgtcgagaccaacggttaccgcgtcgagatgatgtctcccatcaatgcaagaaactttctcgcccgcctgatgcccacgtggcacaagcgcatgaaccacccagcgccgcctcctcacatcatctacttccgtgacggtgtgtctgaaggacaatactcccaggtcctcgaatacgaggtcgaaaccatgaagaagctgatgcagcagaagtaccaggggcaaaaacagcccaagtggactgtgattgtggctaccaagcgtcaccacatccgtttcttcccgcagcagggagacaagaatggaaacccgctgcccggtaccctcctggagcgggaggtgtgccatcccttctggtgggacttctacctctgctctcacgtcgccattcagggcaccgcgcgacccgtccactacactgtccttgtggacgaagccaagatgaacccaaacgaccttcagaaaatgatctatggtcaatgctactcctacgcccgctcgacgactccggtctctcttcatcctgcaatctactacgcggatcttgcttgcggccgcgcccgtgcccatgagaatattgccacttcgcagggcttccgatccggtcccaaggctgcagagatggttgaggagtatggtgctcgtggccagtccatgttcgagaacgagcggcccaccgaggccatgcagctcctgcctctgggcggcggcggtccggacgccgatcctcaagcgacggagatgttcaagggcactatgtggtacatctaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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