2025-04-03 19:56:06, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_062033501 6681 bp mRNA linear VRT 02-JAN-2024 DEFINITION PREDICTED: Entelurus aequoreus zinc finger protein 638-like (LOC133639849), transcript variant X2, mRNA. ACCESSION XM_062033501 VERSION XM_062033501.1 DBLINK BioProject: PRJNA1055515 KEYWORDS RefSeq. SOURCE Entelurus aequoreus (snake pipefish) ORGANISM Entelurus aequoreus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Entelurus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_084752) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_033978785.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/22/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6681 /organism="Entelurus aequoreus" /mol_type="mRNA" /isolate="RoL-2023_Sb" /db_xref="taxon:161455" /sex="male" /tissue_type="Whole Body minus internal organs" /dev_stage="adult" /geo_loc_name="Sweden" /collection_date="2022-06-15" /linkage_group="LG22" gene 1..6681 /gene="LOC133639849" /note="zinc finger protein 638-like; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:133639849" CDS 396..6056 /gene="LOC133639849" /codon_start=1 /product="zinc finger protein 638-like" /protein_id="XP_061889485.1" /db_xref="GeneID:133639849" /translation="
MYHHRSQSQDQQSFPSVSRLGQNQQTHLQHNSPASNMHGFPFPRRTQLPDELESALSIRGARDTDHRLSDHTNQQSQHQGKRQVSIVSQHGGYSSSPIAHSSDNQANQQRADWSSFQPPNKLFASPTSGGSHHSHHPGPHQQSQSNQTGTTIPSWTSGNMSSSQVQRLCRVGAQGQGLYTPENAGSILASFGLSNDDLEVLSHYPDDQLTPDTLPFILRDIQINKSDNQNTVAPNIHDKLLLPTTSSQLKGSSSPEVPSLLTVTKTAGQVIDYGHASRVKDSTTTKTFKREKLSSARKVQMYPSSSSTSTSKVEKVEKRQVRLVHVESSRHGDRDYRRTSSDHHKRSRSRSSDGPPSKSRIADKDYRHNGSKPRFSAEPKNELPSRHSSSSSSGTASQDTSKKLPTSALISDFSGTCPKVFPHSCTLCHIECDHEKDWFDHVNTVNHTAACRDLRNKYPEWKLDRKSPTHSASGLEPPSHKPGWSYSHNDRYHYFAGGGSSQSGLKRPYNDLNKQSDTSLKFSNSKADHGRSHFSANTDKKATRPGNKTTKTAPTKADEHSTKPPPAKKKNTSTSALSDSIEERLVYLTGIPKQTTEQEVTKLVASFGKINNVILIPCFEKESDTLKASVCMEKAADAQALANSANIKIGDQLITASVAKKSEPGQSPVCSNSKPISSLDKVADRKDLTVDANQNILAKKGLVLITGLPGCDCSESDIIELIQPFGHPTDIILASSVRKVLVSLPDVATAQEVVKVHSSTPAKMKDCELKMVNIKQHIGIDTPVALYNLLMESLDPLESSVPVGWNSLLVISNVPNTSTSSSDVKQLVERFGTVVKSLELKNMVICEMTTAPMALSVYKRFQRFPCVIQSNHLLFSRKPDPKASTRTQICSPNLHSPKDILERDDCKSGANNQEAKGNEENYSLKKNKQGPEMLNSPEKVVSEDEEMAKNGSKIVTNTDQVPYSAYEADRLSKTNKVNIPAIQADMKTNKELSVEADMKTNKKMSALETDKEIPTIETYMKTVKEMSIETDMKTDKDISAIKTDTKTEMDTSAIETDMKTDKDMSAIETDMKTDKDMSAIETDTRTDKDMSAIETDTKTEMDTSAIETDMKMDKDMSAIETDTRTDKDMSVIETDTKTDKEMSAIETDTKTDKEMSAIETDTKTDKEMSAIEADTKTDKEMSAIKTDTKTEMDTSAIETDTRTDKDMSAIETDTRTDKDMSAIETDIRMDKDMSTIKTDTKTDKEMSAIEADMKTDNEMSAIETYTKTDKEMSAIKTDTKTDKEMSATETDTKTDKDMSAIKIDLKTDKEMFVIDTHRPTIETDIKTEKKMSDVETDMNTDKKMSDIETDMKTDTEMTVIDTNMSTIETDMKADKTVTTIKTVMQTTINETKLGEEISTDMAIAELTKDAQKAKDTGKRTGGLSNKMAISADGDQTHLESEREKADDETKETRRKRAVDVTNESVKSHIEPALRTQDRVRIEREARREKEAKERERREKERRLWEKERRAKWENEREERIMRHRRERERRDRKRDRDDRSLELRSSYRSETHKTSSFDKPATSRKSDAKPPEMGMDGDFDSFPFNMSEFVTVDEVGDVIDFPNSPPAAAPEDTTKQEQQDSPTCVPQSALEDTPLEITEGMLICQPVKSDDPLTECQHQPIKSDEPITDCQHQFGDSISGCEDPPTFSAETNLSSDVMGMLSCETAAPPTEAQQEISPFDPNLVPACQPEECETDGPTTEMGMTAEIKAAEGKEDKTATLDSSPGKESVTMMLNKEEEKMQKTEDKETSIPSQEPVKHEVSENPTITEKKSDIETPTTTDNALHFDPSNPVGMEFLMPKTGFFCKVCNRFFSGNKDAQITHCKTFKHFENLQKHLERNKKVDATSS"
ORIGIN
caagaaggagtaggaacactcggcggtgtgattcagtgtacaaaagtgtatttctgtttttcacctcacagtcacgctgtgcatacagagtaatttgcatcttgcgtgccgccttcatttggagtccatttcaacattatctgtgacccaacagcaccagaggagaccctttttgcatttggatcttcagcagatgatactttcaacactttgacaagattgacattggttttaggtatctctctttccttgtggcaaaacagttgaagcaacatgttcagagccacgactggactgctgagttaccctagcacctgatccgcacaaatattctcaatagaaaaagactgtcaaactgcaaaactatcacactacaactggatctgtctgctgctatgtatcaccaccggtctcagtcacaagaccaacagtctttccccagtgtgtcaaggcttggtcagaatcaacaaacacatctacaacataattcacctgcctctaacatgcatggcttcccatttcctcgccgtactcaacttcctgatgagctagagtcagctctgtctattcgaggagccagggatacagaccaccgcctatctgaccacacaaatcagcaaagtcaacatcagggaaaacgccaagtgtctatagtcagtcaacatggaggctacagttcaagcccaatagcacacagctctgataatcaagcgaatcagcaaagggcagactggtcaagctttcagcctccaaataaactgtttgcaagccctacatctggtggaagtcatcactctcatcatccgggccctcaccaacagtctcagagtaaccaaacaggaacaaccattccaagttggacatcaggcaacatgtcctcttctcaagtccagcgactatgtcgtgttggtgcgcaaggccagggtttgtatacacctgaaaatgcaggaagtatcttggcaagctttggactatcaaatgacgaccttgaagtgttgagtcattacccagatgatcagcttaccccagacacattgccgtttatacttcgtgacatacaaatcaacaaatcagacaaccaaaataccgtggcacccaacattcatgacaagctgctccttccaacaacctcttcccagctcaaaggttcatcctcccctgaagtacccagtcttctgactgttacaaaaacagcaggtcaagtcattgactatggtcatgccagccgagtaaaggacagtactactacaaagacttttaaaagagagaaactttcaagcgcaagaaaagttcagatgtacccatcatcatcctctacatccacttcaaaagtagaaaaggttgaaaaacgccaggtacgtttggtacacgtggaatcgagcaggcatggagaccgggactaccgtaggacaagtagcgaccatcacaagaggagtcggtcacgcagtagtgatggtccaccatctaaatctcgtattgcagacaaagactacaggcacaatggatcaaagccaaggttctcagctgaaccgaagaacgagctgccctcaaggcactctagttcctcttcatctggcacagcttcacaggataccagcaagaagttgcctacttctgccttgataagtgatttctctggcacgtgtccgaaagtgtttcctcattcctgcaccctgtgccacattgagtgtgatcatgaaaaggactggtttgaccacgttaatactgttaaccacacagccgcctgcagggacctgcgcaacaagtatcctgaatggaaactagatcggaaaagccctacccacagcgcgagcggattggagcctccttcccacaaacctggctggtcttattctcataacgaccgttaccattactttgcaggaggtggatcaagtcaaagtggtttgaagcgcccttacaatgatctaaacaaacaatctgacaccagcttgaagttttctaactccaaggctgatcatggacgatctcacttctccgctaatacagacaagaaggcaacaaggcctggaaacaaaaccactaaaactgcacctaccaaggctgatgagcattccactaagcctccaccagccaaaaagaaaaacacatcgacttcagcattatcagactccatagaagaacgcctcgtttacctgactgggattccaaagcaaaccacagagcaggaagttactaaattagtggcgtcctttggcaagatcaacaatgtgattctcatcccatgctttgaaaaagaaagtgataccttgaaggcatcggtgtgcatggaaaaagctgcagatgctcaggctttggcaaactctgcaaacatcaaaattggagatcagctaatcactgcttcagtggccaagaaatcagaaccaggccagtctcctgtctgctccaacagcaaacctatttcaagtttggacaaagttgcggatagaaaagacttaacggttgatgctaaccagaacattttggcaaagaagggcttagtgcttatcacaggacttcctggttgtgactgctcagaaagtgacatcatcgagctcattcagccattcggacatccaactgacattatcttggcatcgtcagtcagaaaggttctcgtgtctctgccagatgtggcaactgctcaagaggtggtgaaagttcactcttcaactcctgcaaaaatgaaggattgtgaactcaagatggtgaatatcaagcagcatattggcatcgacacaccggtggctctctacaatctactgatggagtcactggacccattggagagttcagttccagttggctggaacagtctcttggtgatcagtaatgttcctaacacatcgacaagctcctcagatgtaaagcaactggttgagcgttttggcacagttgtcaaaagtctggaactcaagaatatggttatttgcgaaatgacaactgcacctatggcgttgtctgtctacaaacgtttccagagattcccatgcgttatccagagcaaccatctgttattttcgcgcaagccggaccccaaagctagcacacggactcaaatctgttctccaaacctgcattcacctaaggatattcttgaacgtgatgactgcaaatcaggtgcaaacaaccaagaggcaaaaggaaatgaagaaaactattctctgaaaaagaataaacaagggccagagatgttaaacagccctgagaaggtggtcagtgaagatgaagagatggcaaagaatggaagcaaaattgtcacaaatacagaccaagtgccttattctgcatatgaggcagacagactgtcaaagaccaacaaggtaaacataccagctattcaagcagacatgaagaccaacaaggaattgtcagttgaagcagacatgaagacgaacaagaaaatgtcagctcttgaaacagacaaggagatccccactattgaaacatacatgaagaccgtcaaggagatgtctattgaaacagacatgaagacggacaaggacatatccgctattaaaacagacacaaagacggaaatggacacgtccgctattgaaacagacatgaagacggacaaggacatgtccgctattgaaacagacatgaagacggacaaggacatgtccgctattgaaacagacacgaggacggacaaggacatgtccgctattgaaacagacacaaagacggaaatggacacgtccgctattgaaacagacatgaagatggacaaggacatgtccgctattgaaacagacacgaggacggacaaggacatgtccgttattgaaacagacacgaagacagacaaggagatgtccgctattgaaacagacacgaagacagacaaggagatgtccgctattgaaacagacacgaagacagacaaggagatgtccgctattgaagcagacacgaagacagacaaggagatgtccgctattaaaacagacacaaagacggaaatggacacgtccgctattgaaacagacacaaggacggacaaggacatgtccgctattgaaacagacacgaggacggacaaggacatgtccgctattgaaacagacataaggatggacaaagacatgtccactattaaaacagacacaaagacagacaaggagatgtccgctattgaagcagacatgaagacagacaatgagatgtccgctattgaaacatacacgaagacagacaaggagatgtccgctattaaaacagacacaaagacagacaaggagatgtccgctactgaaacagacacgaagaccgacaaagatatgtctgctatcaaaatagacttgaagacggacaaggaaatgttcgttattgatacacacaggcccactattgaaacagacataaagactgagaagaagatgtctgatgttgaaacagacatgaacactgacaagaagatgtctgatattgaaacagacatgaagacagacacggagatgaccgttattgatactaatatgtccactattgaaaccgacatgaaggcggacaaaacggtgacaactattaaaacggtcatgcagacaaccataaatgaaactaagctcggagaagagatatctacagatatggccatagcagagttaaccaaggatgctcaaaaggcgaaagacaccggaaaaagaactggcggcctttcaaataaaatggcaatttctgcagatggagatcagacacatctggagtccgagagggaaaaggcggatgatgaaacaaaagagacgaggagaaaaagagcagttgatgtaacaaacgagtcagtaaagagccacatagagccggctttaaggacacaagacagggtgagaattgaaagagaggccagaagggagaaggaagcaaaagagagagagagacgagagaaggagaggagactctgggagaaggagcgcagggccaaatgggagaacgagcgggaggaaagaattatgagacataggcgtgaaagagaaaggagggatagaaagagggatcgtgatgataggtccttagaacttagatcatcttacaggtcggagacacataagacctcctccttcgataagccggcaacttcaagaaaatcagatgctaagccacctgaaatgggtatggatggggattttgattcctttccatttaacatgagtgaatttgtgaccgtggatgaagtaggggatgtgattgacttccccaactctcctcctgctgctgctccagaggatacgacaaaacaagagcaacaggattccccgacatgtgtcccacagagcgctcttgaggacacacctttggaaatcacagagggaatgttaatatgtcagcctgtgaagtctgatgaccccttaacggagtgtcaacatcagcccattaagtccgatgagcccataactgattgtcagcatcagtttggtgattccatatcaggatgtgaagatccgcctacattctcagctgagaccaatttatcatcggatgtgatgggcatgctgagctgcgaaactgcagccccacccacagaagctcaacaagaaatctctccctttgacccaaaccttgtgccagcttgtcaaccagaagagtgtgagacagatggtcccactacagagatgggtatgactgcagaaattaaagctgcagaaggaaaggaagataaaacggcaaccctggatagcagccctggaaaggagagtgtgaccatgatgttgaataaagaagaggaaaagatgcaaaaaacagaggacaaagagacaagcattccatctcaggagccagtaaagcatgaggtgtctgagaacccaacaatcacagaaaagaagagtgatatagaaacgccaacaactacagacaacgctctccattttgaccccagcaacccagttggtatggaattcttgatgccaaaaaccggcttcttctgtaaggtgtgtaaccgtttcttcagcggaaacaaggacgctcaaatcactcactgcaaaaccttcaagcattttgagaacctgcagaaacacttggagaggaacaaaaaggtggatgcaacgtccagctgattttgttaacagcttttgagcgaataacgacattcatcttgttttatttcttgttgcacctgtgaaacgatgacctacaaatgttttatcttcagtccactgcgacagtaagtcatcaatcatttgtattcttcagactttctgatcaagatccaggttcaatttctttaaacgactgcagtaactgaactaaaaaaatcaatacatgatctttaggcacactatatgatttcaaaacagtaaccctaaagatactcattatttatgtggtcttcttcacgtggttgtgagagagaatagattggctgatgaaagatgtttcagatatttgaacatatttgatgtaactgacatcaaataccattaatcagtgcatgtctcatagatttcttcatagatgttttagcgtagttagtctagtcagttattgttctgatcctgtttaaacacttggacatttttcatgtaatattcaatggaaaatgggccaattctgatttacaaacatgactgcaaataatttttctgatttagttttttgtttttcttttactttttcagcttcttgattagttgaccttgtactttgcattaaagagcttgcttggtatgacactttgattag
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DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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