2024-09-08 11:41:04, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_059047015 2813 bp mRNA linear MAM 22-AUG-2023 DEFINITION PREDICTED: Kogia breviceps protein argonaute-3 (LOC131746051), transcript variant X3, mRNA. ACCESSION XM_059047015 VERSION XM_059047015.1 DBLINK BioProject: PRJNA1006431 KEYWORDS RefSeq. SOURCE Kogia breviceps (pygmy sperm whale) ORGANISM Kogia breviceps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Kogia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081310) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_026419965.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/18/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2813 /organism="Kogia breviceps" /mol_type="mRNA" /isolate="mKogBre1" /db_xref="taxon:27615" /chromosome="1" /sex="female" /tissue_type="fibroblast cells from skin" /dev_stage="juvenile" /geo_loc_name="USA: La Jolla, CA" /lat_lon="32.866232 N 117.25444 W" /collection_date="2017-08-24" gene 1..2813 /gene="LOC131746051" /note="protein argonaute-3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:131746051" CDS 120..2000 /gene="LOC131746051" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_058902998.1" /db_xref="GeneID:131746051" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 120..461 /gene="LOC131746051" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(255..257,300..302,342..344,354..356,408..410, 429..431,435..437) /gene="LOC131746051" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 594..1871 /gene="LOC131746051" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1005..1007,1017..1019,1053..1064,1071..1073, 1095..1097,1104..1106,1116..1118,1128..1130) /gene="LOC131746051" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1209..1211,1215..1217,1425..1427,1839..1841) /gene="LOC131746051" /note="active site" /db_xref="CDD:240015" ORIGIN
gtgtggagaatagatagaggagaaaaaaactaatctgagaagccagttaggaggctttttcaatcactagttcagtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcagccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacatacctatctgccactagaagtctgtaatatcgtggcagggcaacgatgtatcaagaagctaacggacaatcaaacctccactatgatcaaagcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgcgtacttccagcacctatgctccagtatggtggccggaatcggacagtagcaacaccaagccacggagtatgggacatgcgagggaaacagttccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatattgaagggtttcacggaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgcggaggtgaaacgtgttggagatacacttttgggtatggctacacagtgtgttcaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaacttggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgctacagtaagagttcagagaccccgacaggagatcatccaggaccttgcctccatggtccgagaacttctcattcagttttataagtcaacacggttcaaacctactcgtatcatcttttatcgggatggtgtttcagaggggcagtttaggcaggtattatattatgaactactagcaattcgagaagcctgtatcagtttggagaaagactatcaacctggaataacttacattgtagttcagaagagacatcacactcgattattttgtgctgataggactgaaagggtcggaagaagtggcaatatcccagctggaacaacagttgatacagacattacgcacccatatgagtttgatttttatctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcaactgctaacttaccagctctgccatacttatgtgcgctgcacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcatttagagccagatatcatcttgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatggacgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtctaagaatattctctgagaggaagaactggaagatgaatcaacatacaacttatgtttccagtggagtcagctgagtggggatgcctccagccatacagaaaccaacactgtgggggggccagagtctgatctttatgttaatacggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctcctgtaggaagtatcgcaatcattttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactctttgcaaaaaaaaaaagtaaagaaaaagtaaatgatggttttttaaaaaacacacctatatgaataatcaaagttattgttcacagttatgtgtgcaaaaaatgtgcattcatgtattcttgtaaaagttatctgtatattttacttatatacctgcatactgcatatgcatatatatctggatctacactgataatagatatatatgtatctctgtatatattttatagttcattccattggggaactttctttcccttttattatcctcccaccaccactatgatttctctctctacctcccttgccttcatcacctacatttgtttttccctgatgctaccagtaacattcagatgttcatgtatctggttcatttgaatatgaagcatggcaaactagatttttattttgcacgccctactcctgtcttgtctcatacataattctgagtcctcatctcttggtattgctttcttaagaaactatatat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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