2024-09-08 11:49:39, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058998101 2125 bp mRNA linear VRT 18-AUG-2023 DEFINITION PREDICTED: Acipenser ruthenus claudin-3-like (LOC117429232), transcript variant X2, mRNA. ACCESSION XM_058998101 VERSION XM_058998101.1 DBLINK BioProject: PRJNA1003472 KEYWORDS RefSeq. SOURCE Acipenser ruthenus (sterlet) ORGANISM Acipenser ruthenus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081212) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_902713425.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2125 /organism="Acipenser ruthenus" /mol_type="mRNA" /db_xref="taxon:7906" /chromosome="24" gene 1..2125 /gene="LOC117429232" /note="claudin-3-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 337 Proteins" /db_xref="GeneID:117429232" CDS 224..1351 /gene="LOC117429232" /codon_start=1 /product="claudin-3-like isoform X2" /protein_id="XP_058854084.1" /db_xref="GeneID:117429232" /translation="
MYSAGLEILGIALSVIGWLGSMVACILPMWKVAAFIGQNIVVAQVIWEGLWMNCVVQSTGQMQCKVYDSLLGLPEDLQAARAMTIVSILLAIVGIMVFVAGAKCTNCMEDEARKPKITISSGVIFIISGMLQLIPVSWSANVITMDFYEPLLGDSQKREMASVGIEILGVVLAVVGWIGSIVACTLPMWRVTAFIGVSIVTSQIMWEGIWMTCVVQSTGQMQCKIYDSLLALPQDLQAARALEVISIILGLLAILISIMGAKCTNCIEDQGAKAKVMIVSGVMFILASLMQLIPVSWSANTIIRDFYNPLVPESSKREMGSSLFIGWAAASLLLFGGAILCCSCPPKETKYVPSRMAYSTAKSAAPSGYDRKDYV"
misc_feature 236..676 /gene="LOC117429232" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 713..1243 /gene="LOC117429232" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN
tgatgaaacctaaatctccagcgagaacaatcagtggtctatttttcagggactgctcttttcaagatctatcccaatggtccggagacacagtcctacacacaggttgagcacagactgagaaggagagatccgatatcttcttcatcctaaaagaaactctgtctgaagttttctgcctgaatttttaacagaaaaagttaagcagtgaagaaagtgaagaatgtattctgccgggctagagatccttgggattgctttgtctgtcattgggtggctgggttccatggtagcctgcatcctgcccatgtggaaggtggcagctttcattgggcagaacattgtggtggcacaggtcatctgggaaggtctctggatgaattgtgtggtgcagagcactgggcagatgcagtgcaaggtctatgattccctgctaggacttccagaagatctccaagctgcccgagccatgacaatcgtctccatcctcctggcaatcgtgggcattatggtctttgtggctggggccaaatgcaccaactgcatggaggacgaggctcgcaaaccgaaaatcaccatcagttccggggtcatcttcatcatttctgggatgctgcaactcatccctgtttcctggtcggccaatgttatcaccatggacttctatgaacccctgctgggtgactcacagaagagggaaatggcttccgttggcatagaaatccttggagtggttttggccgttgtcgggtggataggcagcattgtggcttgcactctgcccatgtggagggtgacggctttcattggggtgagcatcgtgacttctcagattatgtgggaaggcatatggatgacctgtgtggtgcagagcaccgggcagatgcagtgcaagatctacgactccttgctggctctccctcaggatctccaggcagcccgagccttggaggtcatctccataatcttgggcctcttggccatcttgatctccattatgggagccaagtgcaccaactgcattgaagatcagggggccaaagctaaggtcatgattgtgtcaggggttatgttcatccttgcatctctcatgcagctcatcccagtatcatggtcagctaacaccatcatcagggatttctacaaccctcttgtgcctgaatcaagcaagagagagatgggatcttccttgtttatcggatgggctgcagcctctcttctgctctttggaggagcaattctctgctgttcctgcccaccaaaggaaaccaaatatgtgccatccaggatggcttactcaacagccaagtctgccgctccgagtggctatgacaggaaggactacgtctgaacttcttgaaaggtcgtgaggtttttccttcttcatcctgctttagctacgtactttgttttgcaaacagaaaagaaaattcattgatggacaccaaaaagaaagcgatggcacggaaatctaatctagtaacacaagtgaactggtttccatttgccgaactgtggaagattaggaattgaatggtatgaactgaaacttaatggcttgatctcatgtgaaacctagatataaccatcgaacctagaacaacacttggaggatatctgcatgtgttgccatagcatttcaaagaaacctgtattaaaaaaaaaaaaattaaaagatgcagctacgtaaactatataaaatataaaacagattttgattctactagaacctgttcagcagtttgagaaaagtgtgaatgtgtttctgtttactgataatgaagcattttatataaagtaaatagtatatatatagtatatatagtttatattttacttacagcagttcatgaatccgtctttacctaaataagatattttgtttttaatgttggtgatatatttttatcaatgattaaaacaaacttcactaatgtagagaatgtactgttcctgtgtatagtaaagagtgtgcttttttaacatcatttaatccattgttaactggattattgtattatgtgtctgtttcttggatctagtctgaaagtgattattttattctgtatgtttaataattctgtatttgaatggaacggcttgctgttgtttaaaatattttgtt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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