2024-09-08 11:45:24, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058678838 5322 bp mRNA linear MAM 07-AUG-2023 DEFINITION PREDICTED: Ochotona princeps argonaute RISC catalytic component 3 (AGO3), transcript variant X3, mRNA. ACCESSION XM_058678838 VERSION XM_058678838.1 DBLINK BioProject: PRJNA999375 KEYWORDS RefSeq. SOURCE Ochotona princeps (American pika) ORGANISM Ochotona princeps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080833) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030435755.1-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/28/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5322 /organism="Ochotona princeps" /mol_type="mRNA" /isolate="mOchPri1" /db_xref="taxon:9978" /chromosome="2" /sex="male" /tissue_type="muscle" /dev_stage="adult" /geo_loc_name="USA: Grand Mesa, Colorado" /lat_lon="39.087247 N 107.913514 W" /collection_date="2019-07-17" /collected_by="John R. Demboski, Andrea Marie Carrillo" gene 1..5322 /gene="AGO3" /note="argonaute RISC catalytic component 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 Proteins" /db_xref="GeneID:101530714" CDS 74..1954 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_058534821.1" /db_xref="GeneID:101530714" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 74..415 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(209..211,254..256,296..298,308..310,362..364, 383..385,389..391) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 548..1825 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(959..961,971..973,1007..1018,1025..1027,1049..1051, 1058..1060,1070..1072,1082..1084) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1163..1165,1169..1171,1379..1381,1793..1795) /gene="AGO3" /note="active site" /db_xref="CDD:240015" polyA_site 5322 /gene="AGO3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aagatgacagtttcagatttcccttggagtttctgccactgccttctacaaagcacaacctgtgattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcaccaaacctttcctttacagttagaaaatggccaaactgtggaaagaacagtagcgcagtacttcagagagaaatatactctgcagctgaaatacccacaccttccctgtctgcaagtggggcaggaacagaagcatacctacctgcccctggaagtctgtaatattgtggcagggcaacgatgtatcaaaaagctaacagacaatcagacttccactatgattaaggcaacagcaagatctgcaccagatagacaggaggaaattagccgattggtaagaagtgcaaattatgagacagacccgtttgttcaggagtttcagtttaaagttcgggatgagatggcacatgtcactggccgcgtactcccagcgcctatgctccagtatggaggacggaatcgaacagtagcaacaccaagccatggagtatgggacatgcgaggaaagcagttccacacaggagttgaaatcaaaatgtgggccattgcttgttttgccacacagaggcagtgcagagaagaaatactgaaggggttcacagaccaactgcggaagatttccaaggatgcagggatgcctatccagggccagccctgcttctgcaagtacgcacagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcatcatcgtcatcctgccaggaaagacaccagtgtatgctgaggtgaaacgtgtgggagacacacttttgggaatggctacacaatgtgttcaagtcaagaatgtaattaaaacatctcctcagactctctcaaatttgtgcctgaagataaatgttaaacttggagggatcaataatattcttgtacctcatcaaagaccatctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccacctgctggtgatggaaagaagccttctattgctgccgttgttggaagtatggatgcccacccaagtagatactgtgccacagttagagtacagaggccccggcaggagattattcaggacttagcctccatggttcgggaacttctcattcaattttataagtcgacacggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacaatttagacaggttttgtattatgagctgttagcaattcgagaagcttgcatcagtttggagaaagactatcaacctggaataacctatattgtagttcagaagagacatcacactcggttattttgtgctgataggacggaaagggttggaagaagtggcaatatcccagcgggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagtcgtccttcccactatcatgttttgtgggatgataactgctttactgcagatgaacttcagctgctgacttaccagctctgccacacatatgtacgctgtacacggtctgtttctattcctgcaccagcgtattacgctcacttggtggcattcagagccagatatcatctcgtggacaaagaacatgacagtgccgaaggaagtcatgtttcaggacaaagcaatgggcgagatccacaagctctcgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaagagtccaagtatattctctgagaggaagaactgcattgacacacagcctatgttgagtgaagtcaatcgagcaaggagggacgcctccagccatacagaaaccaacacagtggggcccagggtcagatccttatgttggtacaatgaagattgtctgcttcatcaaggaaggcagcaccattatgcaatatgaaaccagccaactgctttttgtgcagtctccgtaggaagtattgcaattgttttcttttcacttcttatagtctaaccgttttaatgcctttacctcaagttgcttggcagcacagctatctttgcaaaaaaaaaaaaaagaagaaaatgtaaatgatggttgaaaaaatacatacctacaggaataatcactgattgttcacaattatgtgcaaaaaaattaacatgcactcatgtattatcttgtaaaagtagtctgtgtatttttaaaatatatacatgcatacttcctatgcatatgtatctggatctagactgataacagatatatatgtatctgtgtatatattttagagctcattccattggggaagcgtctccctttattcccccgtctttgtttccctctcacactgcttgccttcatcagctgtattttttctcctctgatgctgccagtgacattcaaatgttcatgcatctaattcacttgactgtgaagcatggcaaactagatttctatatttattttgcacaccctactcctgtctcctgtctcatacacaattttgagtcctcaaccctgatagtgctttaagaaacaaaattattttctatctgtatctttacacagtgttgtcatatgtctccagactgaacttcacatttgcccctgagcaatgtgtgcataagcagtagcaacctagtattctttatcttcagtgagtttatcaaagctgctacaaatatgaaaccttgtcagaaattgtaactcttcctctctgataagtgacatgtattctaaagccttctgctcctacaggacagacatgaaaattccttaaagcttttataaaggataaatattttaaaaggttggaactctgtagggttgaggcctctgaaattgagtagaggaaagaggattatggagtttttgttttgttttgatttgctttttgctgggttacttgctgcctctcaaaccttaatgtgattttcatatatatttttatatatatgtatgtttgtatatatatatatatataaacatatatgtatgtgttttgaattatagcttccttttcttttatatttattagaatagtgctttaataattataggaccgtgttgacagcatcttttatagaaatataatcatgtttattttaagaactgacaacttgttttttgctatcttttagtgcaataagcagttttaaaggaaagttgtatctttttgacatctctaccatgggtaatgggaggaatgggcacctccataattttataaggatgaagtaatacagccttaatttcagaagggagattttataattttcagttttaaagcatacctttaaaaatcgtaatgaaaatgaagaaagcctaattgcttgcctgagtttgaccttagatcttaaaaataaagttgaacgttaacaagtgacaataaacaacccaacacttaagagatgtctaaattatttgaaaatagattatgtttattgaagattcataccagccaggtgccaatttttatttactaagatgaatcaagaaagtgtgaattgatattttaaagagaatttttgctgatttatcaccagtatgactttccttttaaaactaatgtgatactggcaaaggaagtcgagacttcgatcattttaaattatttaaatcactaaaatgtgggtggggtggggggagttctgcaaaactttcgtctgttgatttcactttaagatgttaagtactaaaaagctgtcaaaaccaagtgtatcaataacattggattcagaggagttttatgccttatagttcatgaaaattgcgttttgactttttttgtttgcactggttaagagtatagatatttcagattgcttccagcgggcattgttattagcctttcagaattccatctgcacatgaaaactaatggatttagatctttagtttgtctcttaccttcaatccactaacattgccaatttactgtattttgagcctaaaatctgagcccatgcccttcaataggcatgaaatcttttgtcccaatgccagaaaactaagaaagtactgtattttgtatctttattattttgaagcatctgaaatgagatttacgatactgtttcaaagcactttacataatatttatatagtatatatacatttttttcctcccagcctgctaccatctcctcagaacaaaaaaaaaaaaatcccattaaagtatgcttgttttcttacattgaaacttcacggaatagagtcaggagcatgagctagagaagacagccatataccctgggtggtgcaagttttatttttctgtgcttgctcagtatgaataaaatgtcttccttcattcgtgggagctacagagactcatgtggaaaatttcagggagcaactgtagctaccctttccctactcactgcttaccctaatctccagtcacttagtgtcacacgtgctagggagaatccgtgaaattaaatgtacttggaaggacattttttaagatgaaaagtattttttctaaaatatagagctttaccttttgagtgatttcttttttagagacttaacactattcagcattgttagtttaaggttgattaacttgaaagaatatgtatagtatatttctattttgcttactaacaaattgatatataaacctaattatttaaaaaaccttatgcatagagttttaagataaaggctaagtggcaaatattggaatttgttcttattattattgcacttttggtgcagaattcctaatctttaaatttttaaaaaggttgctttgagtttctttgtaaatttaaatatgaaactcagaatgatctctctgcttctacccttgctcatgactgaatgctaaattttgatctgctattttctgtgatatgtcatataagagagactttaaaatgtcacccccagcaactgttaaaaatgattttaatgtgaagaagggttgggagtttaatgtatattcctgttggcaatgtctgtgaaaagtgcagatacatgttcttatgttacagtattgagtaactggcattgaggactacgtgtttataatgctgtagctgctatatttatttaagtagggtctgacagttactgcactaaaccttaagatgaacagga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]