2024-05-04 16:14:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_058475211 3165 bp mRNA linear PLN 27-JUL-2023 DEFINITION Penicillium chermesinum Qde2 (N7468_005915), partial mRNA. ACCESSION XM_058475211 VERSION XM_058475211.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185315 KEYWORDS RefSeq. SOURCE Penicillium chermesinum ORGANISM Penicillium chermesinum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 3165) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3165) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-JUL-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3165) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026695314). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3165 /organism="Penicillium chermesinum" /mol_type="mRNA" /strain="IBT 19713" /culture_collection="IBT:19713" /db_xref="taxon:63820" /chromosome="Unknown" gene <1..>3165 /locus_tag="N7468_005915" /db_xref="GeneID:83202514" CDS 1..3165 /locus_tag="N7468_005915" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; N-terminal domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="Qde2" /protein_id="XP_058330951.1" /db_xref="GeneID:83202514" /translation="
MSDNARGRGRGRGSRGDRGDRGGGRGRGELPFRPAGRGQEDRGRGDFRGRGDFRGRGDFRGRGDFRGHGDRGGRGGRGRGGGLNQGPEIFRDGQAPPQPDATVAKIEEGMAKALAVSKQKRTLSQAYPDRPGYGTKGNPTLLYANCLPIQLVSKPLYRYHVGILADGAKAAPAGKKARQIVRLLLEEHFATYLNNVATDYRSTLVASTKLPLAGKEGDKQTFDVRYKDENEDEYPEGPRIFKVTCEQTGTLDPGELSNYLASCDANAALSNKEELVQALNLIMGHRPKTDRSVINIGGNKHYSVKPEAIENFSLGGGLEAIRGFFVSARAAAARVVLNVQVKYAATYQAGRLAGLIEAFWQGEPSRNLFRLEKFLKRLRIRVTHLQRKSSSGKVKASPLKSISSLAYSSDGQGQTDPPKVKRTGAGPFDVEFFVKGAPPKAVPGGSGGEPSKTAAKKGKKAPKAGPSLPGKYISVGEYFKEEYNIDVDPKMPVINTGTRQNPIYLPVEVCEVQPGQTFGSKIGPMQTAAMLNFAVRGRKPGHNAQSIVTKGVDMLGLNESDNGTLASFGVKVGTSLITVQARVLQPPKIQYAKNKEIRTQFGSWNMMDIAFSRPVRIKSWTYLAIEQGRPFWESPAQVQKALESFRGTLTKMGVDLPPASQGQRVVLSGSRDENTRKIDEAVGSLQSTYKDLSLVLGILPGKDTTIYNTIKQICDVRRGVININVQATKLVDGNSQYSANVGLKVNLKLGGVNQSLRASDLGFFGDGKTMLVGIDVTRPSPGSAGNAPSVAAIVASIDASLGQWPAKICIQTQERNEMVEDLNNMMQSRLKLWAKHNKNQYPENIVVYRDGVSEGQYSIVIEKELPLLKEACKALYPATLTKKGLPRLSIIIVGKRHNMRFYPTTSADAERSMNPKPGTVVDRGISESRVWDFYLQAHSALQGTARPAHYFTIWDEIFYPKHPGKPGTANAADVLQDLTHKMCYMFGRATKAVSVCPPAYYADLVCTRARCYLADLFDPESLAEGSVATGGTNQVIDGSKALVHPNVADTMFYI"
misc_feature 562..849 /locus_tag="N7468_005915" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 889..1044 /locus_tag="N7468_005915" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature <1405..1536 /locus_tag="N7468_005915" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1690..3039 /locus_tag="N7468_005915" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2119..2121,2131..2133,2167..2178,2182..2184, 2209..2211,2218..2220,2230..2232,2242..2244) /locus_tag="N7468_005915" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2323..2325,2329..2331,2548..2550,3007..3009) /locus_tag="N7468_005915" /note="active site" /db_xref="CDD:240015" ORIGIN
atgtctgacaacgctcgaggtcggggccgtggccgtggtagccgtggtgaccgcggcgaccgcggcggtggtcgaggtagaggagagctgcctttccgtcctgctggtcggggccaagaagaccgtggccgtggtgacttccgcggccgtggggattttcgtggtcggggagacttccgtggtcgaggagatttccgtggtcatggtgacagaggagggcgtggcggtcgcgggcgtggcggcggtctcaaccaaggcccagaaatcttcagggatggtcaagctccgccgcagcccgacgccactgtcgccaaaattgaggaaggaatggccaaggccctcgccgtatccaaacagaagcgaaccctatcccaggcctaccctgaccggccgggatacggtaccaagggcaatccaaccttgctgtatgccaattgcttgcctatccaattagtgagcaagccgctgtacaggtaccatgtcggcatccttgccgacggtgctaaagctgcacctgcaggcaaaaaagctcgacagattgtccggctgctgttggaggagcactttgctacgtacttgaacaatgtggcaaccgactaccgctcgactttagttgcaagcaccaagctccccctcgctggaaaggagggcgataaacaaacttttgatgtccgctacaaggacgagaacgaagatgagtacccagagggcccgcgaatttttaaagtaacctgcgaacagacaggaaccttggatcctggagagctatccaactaccttgcctcgtgcgatgcgaacgctgcgctaagcaataaggaggagcttgtccaggcactgaatctgatcatgggtcatcggcccaagactgaccgctcagtgatcaacatcggtgggaacaagcactacagtgtgaagcccgaggcaattgaaaatttctcgctgggaggaggacttgaagcaatccgtggattttttgtcagtgcacgtgctgctgctgctcgagttgtgttgaatgtgcaggtcaagtacgccgccacctaccaggctggccgattggctggactgatagaggcattctggcaaggcgaacccagtcgaaatcttttcaggcttgagaaattccttaagcgtttgcgaattagggtgactcacttgcagaggaagtcaagcagcggaaaggttaaggcttcgcctctaaagtctatttcttctttggcgtacagttcggatgggcaaggacagacggacccccctaaagtgaaaagaaccggcgctgggccgtttgatgttgagttctttgttaagggtgcccccccaaaggctgtcccaggggggtctggaggtgaaccttccaagaccgcagctaagaaagggaagaaagcacccaaagccggcccatcactccctggtaaatacatttctgttggggaatacttcaaggaagaatacaatatcgacgtggatcccaaaatgcctgttatcaacaccgggacccggcagaacccaatctacttgcctgttgaagtctgtgaagtccaacctggtcagacttttgggtctaagattggcccaatgcagacagcggctatgctcaactttgctgtgaggggccggaaacctggccataatgctcagtcgatcgtgactaagggtgtcgatatgcttggcctgaacgagtccgacaacggtaccctggcttcctttggagtcaaagtcggcacaagcctgatcaccgtgcaggcacgagtcctccaacctccaaaaatccagtatgccaaaaacaaagaaatcagaactcaatttggtagctggaatatgatggatattgccttttcgaggcccgtaaggatcaagtcttggacatatttggccattgagcaaggaagaccattctgggagagtccagctcaggtgcaaaaggctctagaaagcttcagaggcacgctcacgaaaatgggagtcgatcttcctccggcgtctcagggtcaacgtgtcgttctgagtggtagtcgggatgaaaacacaagaaagatcgacgaggccgtgggtagcctccaatccacgtacaaggatctgtctttggtgctcggtattctccctggcaaggatacaacgatctacaacacaatcaaacagatttgtgacgtacggcgaggtgtcataaacatcaatgtgcaagccaccaaactcgtcgacggcaactcacagtactctgcaaacgtcggtctaaaggtgaacttgaagctcggtggggtcaaccagtcccttcgtgcctcagatctgggctttttcggcgatggaaagaccatgctcgtcggcatagacgttacccgcccctcgccaggctcagccggaaacgcacccagtgtggcagcaatcgtcgcctctatcgatgcctctctcggccagtggcctgcgaagatctgtattcaaacccaggagcgcaacgaaatggtcgaagatctcaacaacatgatgcagtctcgcctgaagctctgggccaagcacaacaaaaaccaatacccggagaacattgtagtctaccgcgacggtgtctccgagggccagtactccatcgtcatcgaaaaagagcttcctctgttgaaagaagcctgtaaggctctgtatccggccactttgaccaagaagggcctcccacgcctctccatcatcatcgtcggcaaacgccacaacatgcgcttctatcccaccacctccgccgatgcagagcgatccatgaaccccaagcccggcaccgtcgtcgaccgcggcatctctgagtctcgcgtctgggacttctacctgcaggcccattctgccctccaaggtaccgctcgcccggcccactacttcaccatctgggacgagatcttctaccccaagcacccgggcaagccaggcactgcaaacgccgcagatgtcctgcaggatttgacccataagatgtgttacatgttcggccgagctactaaggctgttagcgtctgcccgccagcgtattatgcggacttggtgtgtacgcgcgcgcggtgctacctggctgatctgtttgacccagagagtttggctgagggtagtgttgctaccggtggtacgaaccaggttattgatggttctaaggcgctggtccatccgaacgtggcggatactatgttctacatttag
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@meso_cacase at
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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