2024-05-04 23:54:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_058456510 2949 bp mRNA linear PLN 27-JUL-2023 DEFINITION Penicillium cinerascens uncharacterized protein (N7498_009454), partial mRNA. ACCESSION XM_058456510 VERSION XM_058456510.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185320 KEYWORDS RefSeq. SOURCE Penicillium cinerascens ORGANISM Penicillium cinerascens Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 2949) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2949) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-JUL-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2949) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (01-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026695298). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2949 /organism="Penicillium cinerascens" /mol_type="mRNA" /strain="IBT 15544" /culture_collection="IBT:15544" /db_xref="taxon:70096" /chromosome="Unknown" gene <1..>2949 /locus_tag="N7498_009454" /db_xref="GeneID:83183811" CDS 1..2949 /locus_tag="N7498_009454" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; Mid domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_058303409.1" /db_xref="GeneID:83183811" /translation="
MSGNRGGRNLPIHGGRSDGGGNRGRGGDRGGDRGGDRGGRGQGGSRGPSSGGGFNQGGGGRGPSVPKEPDVDPIILYKYEPKVNREITKFEDKCIAQNRGQRAKTGQLALRPEYGSNGTEIIVRANFFEAMFKSPKWMSHRVKIIPEPQNVRLRREVFIELMGKREVREAHAATDGAQEIVAMKDLTVHSPMTVTVDANLRGAKDFDVVLSRGELGEPSQLLTSLDSTSLREQTPAELSTIRLMNILMSAHPFRDAGVATIKSANGTKVFWTDTRKQACYLGGGIECIRGFNSSVRVCDNRILVNLGINHSSFFLQGPLQIIFLKFREVHRDDIVLLNRYINRLRVNVTHLCKRMENGVEVYRQRSIWGLAYPNRDGYDPKTKFKQATDPNPPVVPRLGASADEVKFFKYNQDSEGKRLQTGKYISVTDYFKAEYKMDLKYHDWPVVNIGSFVRPIYLPLDVCIVPHGQRFMGELALIQRQNIIAFSCRKPPANYQSITQDGLKIMGMNNQTDELGMRFLKEMIAVPGRLLSAPTLKYGKGRTLVPKFGSWNLKGQQFYTPVTINRWAAYVFHKHNQKPRDGEHVRAFEALAKQGREQGMRWPSLSREPELVEVEDRPKDWIEQINGIFKTLQRAQVDIVVISLPPGVDRIFDHIKYISETKAGVLTHCCLASKFFKADQQYMANNTMKVNLKLGGVNQTLSAAPRLIMSRNTMVVGLDVTHPSPTDPDNFPSMATIVASTDSPMGQWPGEVRVQERRKEEVEHLKSMMLGRLHRWKNENKVFPANILIYRDGVSEVQFKMVLDKELKLVKDAVQAVYPDKQPNVTIVVAGKRHNVRFYQTKPGDADRTDGPKNGLVVDRGVTRSIYWDFYLQAQTPLQGSARPAHYIVIWDEIFSASNADPKPADSLQELTHSICYMMGRCTRSISYATPAFLADKFCDRARRYMRAYFYRCQETREPLELNRPDHIVKLLGSAQEKMAYI"
misc_feature <844..942 /locus_tag="N7498_009454" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature <1264..1395 /locus_tag="N7498_009454" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1537..2838 /locus_tag="N7498_009454" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1954..1956,1966..1968,2002..2013,2020..2022, 2044..2046,2053..2055,2065..2067,2077..2079) /locus_tag="N7498_009454" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2155..2157,2161..2163,2374..2376,2806..2808) /locus_tag="N7498_009454" /note="active site" /db_xref="CDD:240015" ORIGIN
atgtctggcaatcgcggaggccgaaacctccccatccatggtggccgttccgatggaggcggcaaccgaggccgcggtggtgatcgcggtggtgatcgcggcggagaccgaggcggccgtggacaaggtggttctcgaggcccttcatctggtggtggcttcaaccaaggcggtggtggacgtggtcccagtgtcccaaaagagccggacgttgacccgatcatcctttacaagtatgaaccgaaggtcaacagggaaatcaccaagttcgaagacaaatgtattgcccagaacagaggtcagcgggccaagacgggacaactcgctcttcgccctgagtatggcagcaacggaacagaaatcatcgtgcgcgccaacttctttgaggccatgttcaaatcaccgaagtggatgtcccacagagtgaagattattccagaaccgcagaatgttcgtctccgtcgggaagttttcatagaactcatgggtaagcgggaggtcagagaggctcacgccgccactgatggcgcccaggaaatcgttgccatgaaagacttaacagttcacagtccaatgacagttaccgtcgacgcaaacttgagaggtgcaaaagacttcgacgtcgtgctgagccgaggcgaactgggtgaaccctcgcaactgttgacgagccttgacagtacctcccttcgagagcaaaccccagcagagctgagcaccattcgacttatgaacattctcatgagtgctcatccgttcagagacgcaggcgttgcgaccatcaagagcgccaatggcaccaaggttttctggaccgacaccagaaagcaagcgtgctatctcgggggcggcatcgagtgtattcgtggcttcaactccagcgtgagagtatgcgacaatcgcatcctggttaacttgggcatcaatcacagctcgttcttcctgcaaggtcccttgcaaattattttcctcaagttcagggaggttcatagagatgatatcgtcctgctgaatcgatacatcaatcggcttcgcgttaacgtaactcatctttgcaagcgtatggaaaacggggtagaggtttatcggcagaggagcatttggggccttgcctatcctaaccgtgacggatatgacccgaagaccaagttcaagcaggccaccgacccaaatccccccgtagtaccacgtctgggagccagcgcggacgaagtcaaattcttcaagtacaaccaggatagcgaagggaaaaggcttcaaactggaaagtacatcagcgtcaccgactacttcaaagcggaatacaaaatggaccttaagtatcatgactggcctgtggtgaatattggcagttttgtgcgaccgatctaccttcctttggatgtctgcattgttccacatggacagcgcttcatgggtgagttggcgttaatccaacgccagaatatcattgcgttcagctgccgcaagccgcccgcgaactaccagtccatcacgcaggacggtctgaagatcatgggaatgaataatcaaacagacgaacttggaatgcgattcttaaaggaaatgatcgctgtgcctggacgccttctctcggctcccactctgaaatatggaaaagggaggacgctggttcccaagttcggctcttggaacctcaagggccagcaattctacacgcctgtcaccatcaatcgttgggccgcttacgtttttcacaaacacaatcagaagccacgagatggggaacacgtccgcgcgtttgaggctctcgccaaacaaggaagggaacagggcatgaggtggccttctttgtcgcgtgaacccgagttggtcgaggttgaggacagacccaaggattggattgaacaaatcaatggcatattcaagactctccagagggcacaggtcgacattgtggttatctcgcttcctcccggcgtggatcgcatcttcgaccacatcaaatacatcagtgagaccaaggccggcgtcttgactcactgctgtctcgccagcaagtttttcaaagccgaccagcagtacatggcaaacaacaccatgaaggtcaacttgaagcttggtggtgtcaaccagacgctcagcgccgctcctcgcctgattatgtcaagaaataccatggtcgttggtctcgatgtgactcacccatctcctactgacccggacaatttccccagtatggcaacaattgtggctagtacagattcaccaatgggacaatggccgggcgaggtcagggtgcaggagcgccgcaaggaggaagttgagcatctaaagagcatgatgctgggccgcctgcacagatggaagaacgagaacaaagtattccctgcaaatattctgatctatcgcgatggtgtcagcgaagttcagttcaaaatggtcttggacaaagaactcaagctcgtcaaagatgcagtccaggccgtataccctgataaacagccgaatgtcaccatcgtcgtggctggcaaacgacacaacgtgcgcttctaccaaaccaagcccggggatgcagacagaaccgatggcccaaagaatggcttggtcgtcgaccggggcgtcactcgctctatctattgggacttctacttgcaggcacaaacaccactccagggttcagcccgtccagcgcattacatcgtcatctgggacgagatctttagcgcctcgaatgctgaccccaagccggctgactccctccaggaactgacccatagtatctgctacatgatgggtcgttgcacacgctcaatcagttatgccacccctgccttcctcgcagacaagttctgtgaccgggcccggagatacatgcgagcatacttctacagatgccaggaaaccagagagccactcgagttgaataggcccgaccacatagtcaagttgcttggtagtgcacaggagaaaatggcctacatctga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]