2024-09-08 11:54:16, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058195252 3793 bp mRNA linear VRT 17-JUL-2023 DEFINITION PREDICTED: Ahaetulla prasina protein argonaute-3 (LOC131204239), transcript variant X4, mRNA. ACCESSION XM_058195252 VERSION XM_058195252.1 DBLINK BioProject: PRJNA993715 KEYWORDS RefSeq. SOURCE Ahaetulla prasina ORGANISM Ahaetulla prasina Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Ahaetuliinae; Ahaetulla. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080548) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028640845.1-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/13/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3793 /organism="Ahaetulla prasina" /mol_type="mRNA" /isolate="Xishuangbanna" /db_xref="taxon:499056" /chromosome="10" /sex="female" /tissue_type="muscle" /dev_stage="adult" gene 1..3793 /gene="LOC131204239" /note="protein argonaute-3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:131204239" CDS 488..2659 /gene="LOC131204239" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_058051235.1" /db_xref="GeneID:131204239" /translation="
MKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYDADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQKPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTIYAEVLVLLIILKLELSNQWESEEETTEAYRWSGRALEN"
misc_feature 500..652 /gene="LOC131204239" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 653..1015 /gene="LOC131204239" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(809..811,854..856,896..898,908..910,962..964, 983..985,989..991) /gene="LOC131204239" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1148..2425 /gene="LOC131204239" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1559..1561,1571..1573,1607..1618,1625..1627, 1649..1651,1658..1660,1670..1672,1682..1684) /gene="LOC131204239" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1763..1765,1769..1771,1979..1981,2393..2395) /gene="LOC131204239" /note="active site" /db_xref="CDD:240015" polyA_site 3793 /gene="LOC131204239" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tgtcctaggagagtgaacagggaggtagtagattcaatggtgcagcattttaaagtgacaatatttggtgaccgtagaccagtttatgatggtaaaagaagcctttatacagccaatccactccctgtagcaacaaccgggttacttccgtatacatggggattttattcatttatttaacttgacattggtgttatatgccaataatttgactgacaaccagcaatttcagccaccaatttcagcaaattgataacagtttacaacaaaagcataaaaaagggttgatttggatgtaacattgccaggagaaggtggcaaagatcgtcccttcaaggtgtccataaaatttgtttcccgggtaagctggcacctattgcatgaagttctgactggacgaaccttacctgagcctctggaattggacaagccaatcagcactaaccctgttcatgctgttgatgtggtgctacgacatttaccctccatgaagtatacacctgtaggccgttcctttttttctgctcctgaaggctatgatcatccgttgggaggtggcagggaagtctggtttggatttcatcagtccgttcggccagcaatgtggaaaatgatgctgaatatagatgtttctgccactgccttctataaagcacaacctgtaattcagttcatgtgtgaagttcttgatatacacaacattgatgaacagccacgacctctgactgattctcaccgtgtaaaattcaccaaagagataaagggtctgaaggttgaagtgactcattgtggaacgatgaggcggaaataccgtgtctgtaatgttacacggagaccggctagtcatcagacatttccattgcagttagaaaacggtcagactgtggaaagaacagtagcacagtatttcagagaaaagtacaacctacagctgaaataccctcatcttccttgtctacaagtgggacaggagcagaaacacacctatctgcctcttgaagtgtgtaacatcgtggcaggccagcgatgtattaagaagcttacagacaatcaaacatcaaccatgataaaagccacagccagatctgcacctgacagacaagaagaaatcagcagactggtgcgaagtgcaaattacgatgctgacccatttgttcaggaattccagtttaaagtgcgtgatgagatggctcatgtgacggggcgtgtgctcccggctcccatgttgcagtatggagggcggaatcgaacagtggcaacaccaagccatggtgtatgggatatgcgggggaaacagtttcacacaggtgttgaaatcaagatgtgggccattgcttgctttgcaacacagaggcaatgtcgcgaagaaatactaaagggtttcacagaccagctgcgcaaaatttccaaggacgcagggatgccaatccagggccagccttgcttctgtaaatacgcccaaggtgctgacagtgtggagcccatgttccgacaccttaaaaacacatattcaggactccagctcatcatcgtcatcctgccaggaaagaccccagtgtatgcggaggtgaaacgtgtgggggacacacttctggggatggctacacagtgtgttcaagtcaagaatgtcataaaaacatctcctcagaccctctcaaacttgtgcctaaagattaatgtaaaattgggaggaatcaacaacatccttgtacctcatcaacgaccttctgtgttccaacaaccagtgatcttcttgggagccgatgttactcatccacctgctggggatggaaagaagccttccattgctgctgttgtaggtagcatggatgctcatccaagcaggtattgtgccacagtgagagtccagaaaccccgccaggagatcatccaagatttggcctccatggttagagaacttctcatccaattctacaaatcaacacggttcaaacccacacgaatcatcttctatcgtgacggagtttcagaaggacagtttcgacaggtattgtattatgagctgctggcaattagagaggcttgtatcagcttggaaaaagactatcagcctggcataacatacatcgtggttcagaagaggcatcatacgaggctgttttgtgctgataggacagaaagggttggaagaagtggaaacatccctgctggaacaacagtagatacggatatcacacatccttatgaatttgatttttacctctgtagccatgcaggaatacagggtaccagccgcccctcacactatcacgtcttgtgggatgacaattgttttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgcacacgatctgtgtctatacctgcaccagcttattatgctcacctggtagcattcagagcaagataccatcttgtggacaaagaacatgacagtgccgaaggaagccatgtttctggacagagcaacggaagagatcctcaagccctcgctaaggctgtacagattcaccaagacaccttacgcaccatatatgctgaggtcttggttttgctgataatactgaagttagaactcagtaaccagtgggaatctgaggaggagaccaccgaggcttacagatggagcgggagagctttggaaaactaaattgaagaggcacttctataggaggtaaaaaccaagttgacagaaaggaaatgttcgtccggtgtactactagttcatatccatatgagaactatgtctgacttacctctggcctatagatcactccgaagacctgtttccttgcaggattgttccgccatcttgaagcggtcggtttattgaaagcaaaacagtcctcaaagtgcctttttagaagatggtgctgtagatgattttttgtttttgttcccaaagttgtatatggaggagggagggggtggggcaggggcggcagaatcaaaacgtttagtgaaaacatgccaagttcttcataatatccctcgtggtgcttggcactacatggcgttttcccttaaactaggaccaaataaccatggaccatatgatgtttgggaaaaggaatggtactgttagaccaggggtctccaaccttggcaactttaagcctggaggacttcaactcccagaataacccagccagctttgctggctggggaattctgggagttgaagtcctccaggcttaaagttgccaaggttggagacccctgtgttagacaattaaaactccactgtgtggattatactttagatattttaggataggttagctcaagatactgtaaactctgaaagtcacttcaaaagtcatcaacagtgaaattgggggtaagcagatacactcctgaagttttgcgtacctcaaagcgggtaaaattttggaaattccagcttgtacttagtgttttttttttttattctaatgattgcagtagcagatgtaatatggcaaaaaaaatatattactttttcatgctgagtatgcctattaaccctgggacatctctttttttacttttccaatactgttttctttgaggtttctactagcggggaagtaattaataacaagcatctcagtagcagtgtaattctgcagaaataacagttaacaacattgtggtcacactctaaaagttacttgtaaatgcctaaaaattgaaccaaaccagtaacaatcttgatatcaggagcatatttttcaagaaaaatcttgacttctattttgtttagattattggttatcggtgtcgtgtatttatgctgtaatct
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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