2024-04-29 03:07:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_057783220 3930 bp mRNA linear ROD 28-JUN-2023 DEFINITION PREDICTED: Chionomys nivalis NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X2, mRNA. ACCESSION XM_057783220 VERSION XM_057783220.1 DBLINK BioProject: PRJNA986173 KEYWORDS RefSeq. SOURCE Chionomys nivalis (European snow vole) ORGANISM Chionomys nivalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Chionomys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080095) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_950005125.1-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3930 /organism="Chionomys nivalis" /mol_type="mRNA" /db_xref="taxon:269649" /chromosome="10" gene 1..3930 /gene="Nrde2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:130883040" CDS 445..3450 /gene="Nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X2" /protein_id="XP_057639203.1" /db_xref="GeneID:130883040" /translation="
MTDRKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSAVKKHSHKHLERYFTKKSVGLMHTEGIAVCGNTEPPSSEPVPFIPVKDSADVAPPVATWLNPLGIYDQSTTQWLQGQGPLEQEPKQPDSQRDRESAALKARVEEFNRKVRENPRDTQLWMAFVAFQDEVMRSPGLYALEDGEQEKHRKSLKLLLEKKLAVLERAIESNPSSVDLKLAKLQLCAEFWEPSALAKEWQKLLFLHPNNTDLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVNPDEDEEEPEEDDQEIKDKTLPRWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPGLHFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSVFDSELYDEKPLTYFNPSFSGISCVGYMEQLGCPRWTKGHSREGEDFIRNVFHLVLPLFSGKQKSQLCLSWLRYEVAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDARKVFDTALSMAGSNELKDRELCELSLLYAELEMELSPDSRGAATGRAVHVLTRLTESSPYGPYAGQVMATQVLKARKAYERALQDCLGQTCASDPAPAESLDCLGSLVKCFMLFQYLTVGIDAAVQIYGQVFAKLKGSVFPEGPGPEDSARSQSLSNVLEAVTLMHTSLLRFHMNSSVYPLAPLRETLSEALKLYPGNQVLWRAYVQIQNKSHSANKTRRFLDVVTRSAKHLEPWLFAIEAEKTRKRLVDSVQRVGGREVHATIPETGLTHRIRNLFENAIRSDKGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELPEILDVMTEKELRVRLPLEELELLLED"
misc_feature 451..729 /gene="Nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(451..465,472..477,487..492,496..498,502..546, 553..561,565..573,595..603,613..618,622..627,634..654, 679..690,700..729) /gene="Nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 895..1893 /gene="Nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
cttgtgaactgctgatagccccagtgatgctctcgagaagaccctgagatgaaagaactgataagagttcgtccttttgctcaatctccaggggacctgtgaccatcttccctcacttaactcctgagtcctctgaggtcacaactctccggtgagagtgatactagcaaaacagccacccaggttagcagaaagaagaagaaagagaaaaagaaaaagaggaaacatcagcaccacaagaaaactaagaggatacaggagcagtcgagcagcggtgggtctgagtcagacacagattctgggaaggacaggtcttccagaagcatcaaggacagtcagaaggaatctgagaaacccagtcagggaagtgatgctgttggtactgctgctgctggacaccggtccatttggctggaagacattcagactctagcagaagtcttcatgacagataggaaaccagatcctgccaactgggagtataaatctctttaccgaggggatatagcaaggtacaagaggaaaggagactcctgcctgggcattaatcctaagaaacagtgtatatcttgggaagggacttctgcagttaagaagcattcacacaagcacctggagcgctattttaccaagaagagtgtgggattaatgcacactgaggggattgctgtgtgtggtaacaccgagcctccctcctctgaaccagtcccgtttatcccagtgaaggactctgctgatgtggctcctcctgttgcaacatggctgaatcctctggggatttatgatcagtcaactacacagtggttacaaggacagggtccgctagagcaagaaccaaagcagccagactcacagcgggaccgggagagcgctgctcttaaggccagagtggaggagttcaacagaaaagtgcgggagaatcctcgggatactcagctgtggatggcctttgtagctttccaggatgaggtcatgaggagccctggcctgtatgcccttgaggacggagagcaggagaagcacaggaagtccctgaagctcctcctggagaagaagctggccgtgctagagcgagccatcgagagcaacccaagcagtgtggacctgaagctcgccaagctgcagctgtgtgcggagttctgggagcccagtgcgctggccaaggagtggcagaagctcctctttctgcatcccaacaacacggacctgtggcagcgctacctctccttttgccagagtcagtttggtaccttctctgtgtccaaactccacagtctgtatggcaagtgcttgagtaccttgtctgctgttaaggatggcagcatcttgtcccacccggtactaccaggcacagaggaggccatgtttgcactgtttcttcagcagtgccactttctgcggcaggccggccactcggagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtaaaagagctgcccaccaaagtacaggtggaattctttgaacccttctgggacagcggagagccccgtgttggggagaagggcgcccgaggctggcgggcgtggatgcaccagcaggagcgtggtggctgggtgcttgtcaatccagatgaggatgaggaggagccagaagaggatgaccaggagataaaagataagactctgcccaggtggcaaatctggcttgctgttgaacgttctcgagaccagaggcactggcggccctggcgtccagataagaccaagaagcaaacagaagaagactgtgaggaccccgagagacaggtgctgtttgatgacattgggcaatctctgatcagactttccagcccaggtcttcatttccaactcattgaggcctttctgcagttcttgggcgtgccttccggttttcttcctccagcctcctgcctttacctggccatggacgagagcagcgtctttgatagtgaactttatgatgaaaagcccttgacctacttcaacccttcattttcgggcattagctgtgttggctacatggagcagttgggctgtcctcgctggaccaaaggtcacagccgagagggcgaggattttatccgcaatgtcttccaccttgtgctgcctttgttctcaggcaagcagaagtctcagctctgcctctcctggttgcggtatgaggttgccaaggtcatttggtgtctacacactaaaaagaagcgattaaagtctcagggaaagaactgcaaaaaactagccaagaatctccttaaagagccagaaaaccgcaacaacttttgcctctggaaacagtatgcacacctggaatggttgcttggcaacatagaggatgccagaaaagtgttcgatacagcactcagcatggcaggcagcaatgagctgaaggaccgtgaactctgtgaactcagtctgctttatgccgagctggagatggaactgtcgcctgactcccgaggagcggccacaggccgagctgtccacgtgttaacgcgactgactgagagcagtccctacgggccctatgctgggcaggttatggccactcaggttctgaaagcccgaaaagcttatgaacgcgctctgcaggactgtctgggacagacttgtgcctcagacccagctcctgcagagtccttggactgcctggggagcctggtcaaatgctttatgcttttccagtatttgactgtcgggatcgatgctgctgtgcagatatatggacaggtgtttgccaagctgaagggctctgttttcccggaaggccctggcccggaggacagtgccaggtcccagagtttgagcaatgttctcgaggccgttaccctgatgcataccagtctgctgcgattccacatgaacagtagtgtgtaccctctggctccacttcgagagacgctctcagaggctctaaagctgtacccaggcaaccaggttctctggagggcatatgtacagattcagaataagtcccacagtgctaacaagaccaggagattcttggacgtagtcaccaggtctgccaaacacttggagccgtggctgtttgccatcgaagccgagaagacgaggaaaagactggtggactctgttcagagggtaggtggtagagaggtccacgccaccatcccagagactggccttacgcatcggatcaggaacttgtttgaaaatgcaattcggagcgacaagggcagccagtgcccccttctgtggaggatgtatttgaattttttggtttccttaggaaacaaggagagaagcaaaggtgtgttctacaaggccctccagagctgtccctgggcaaaggtgctgtacatggatgccatggagtacttcccagatgagctgccggagatcctggatgtgatgactgagaaggagcttcgtgtacgcctgcccctggaggagctggagctgctgctggaggactagagtcaacctccgaggaacggagccagtgaggacagtggggcccaggagagctccagctgtgcacgggcttactccactgtttgggtggggtttggacttactgttttacatattatatatgtgatcaactatgtacagatggagccaggccagtgataaaccttttatggtcgagatgtgtgcagctttttattccttctgctccactctgtgcattcgacactggcctgtcgcaccgcatgtgtttatgatcccgggctaggcctctgaccccagccacaggcctggcttgacgttgagacttcctcccgctttccctgggctggtaaccatccagcacagtagatggttatttaagcgtttcctgtcttgctctggtgaccagcaacgtttacaagggcctttgggtctgccaggcactgctcagaatctgccttccatcagaatccaggtgcccatgtgctcagcgggcagggtacc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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