2024-05-05 00:45:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_057572505 1494 bp mRNA linear PLN 27-JUN-2023 DEFINITION PREDICTED: Lotus japonicus protein argonaute 12-like (LOC130721920), transcript variant X1, mRNA. ACCESSION XM_057572505 VERSION XM_057572505.1 DBLINK BioProject: PRJNA984304 KEYWORDS RefSeq. SOURCE Lotus japonicus ORGANISM Lotus japonicus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; robinioid clade; Loteae; Lotus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080046) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_012489685.1-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/21/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1494 /organism="Lotus japonicus" /mol_type="mRNA" /db_xref="taxon:34305" /chromosome="6" /ecotype="B-129" gene 1..1494 /gene="LOC130721920" /note="protein argonaute 12-like; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:130721920" CDS 230..1369 /gene="LOC130721920" /codon_start=1 /product="protein argonaute 10-like isoform X1" /protein_id="XP_057428488.1" /db_xref="GeneID:130721920" /translation="
MSHRQTQLHHRPSSVRRGRAREPPLPPPSISRRRGGFRPPRLPSHPIFHSSSDRGQAPPPSSPPPSAPERGHASSSPSPPVSTESLPSAPTQMDLSLNTDVPVSIIDYISQQCGIDCSLSVSDEDRVKVNKTLTGLEFEVSIQGHPEIRYTIGGVSIREVNKLMFTLLDKTLSVCEYWEGKYKVKLEYKHLPAIRVGSEKKPTYFPMEFCKIVREAIKTPCDREGDIKKIVKRRKKFKDYKLVQHSNMQVDEDPTAIEARVLPSPKLKSHDPDTKARDTPPMGQLNLSKMKMENGGNLTRWGCLNFSKLGTDCVAGFCAKLGDICTAMGMVFNSTPVIPMKSAESAKLRKEIDEIHKQEGRLQLLLIILPEVKNIYMEK"
misc_feature <497..>1357 /gene="LOC130721920" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 533..868 /gene="LOC130721920" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(677..679,722..724,749..751,761..763,815..817, 836..838,842..844) /gene="LOC130721920" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" ORIGIN
acctgtgtgtgctctgttttttttgcttcttcttcttctttgagagtagagtacattgattacattttgctgcagaaagcatctttgatgacgaccatggagcaattattaatgctcagagaagaaactcacgccaattcaaccctacctacctcactgagtctaaccgtcgctcctcactctccaacttctttttcttccgatcaactccctaccgtcgcaaatcacaatgtcgcatcggcaaactcaacttcaccaccgtccttcctcagtccgccgcggtcgtgcacgtgaaccgccgctccctcctccttccataagccgtcggcgtggcggtttccgaccaccgaggctcccttcacatcctatttttcattcttcatcagaccgtggccaggcacctccgccgtcttctcctcctccgtcagcccccgagcgtggtcatgcatcttcctcgccttctccacctgtttctaccgagtcattgccgtccgcgccaactcagatggacctctctctcaacacagatgtcccagtttctatcatagactatatttctcaacaatgtgggatagattgttcactttctgtgtcagatgaagatcgtgttaaggtaaacaaaacactgactggcttggaatttgaagtttccatccaaggtcaccctgaaatacggtataccattggtggtgtttcaataagagaagtgaacaaattaatgttcacacttcttgataaaacattatctgtttgtgaatactgggaaggaaaatacaaggttaaattggaatacaaacacttacctgctattcgagtgggaagtgaaaaaaagcccacgtatttcccaatggagttttgtaaaattgttagggaagccattaagaccccttgcgatagggagggagatataaaaaagattgtcaaaaggaggaagaagttcaaggattataaacttgtacaacattccaacatgcaagtagatgaggatcctaccgcaattgaggcccgtgttttgccatccccaaagctgaaatctcacgatccagacacaaaagcaagagatacaccaccgatgggtcagttgaatctaagtaaaatgaaaatggaaaatggtggtaatctgacacgatggggctgtctcaatttttcaaaattgggaacagactgtgtagctggtttttgtgcaaaattgggtgacatctgcacggccatgggaatggttttcaactcaacccctgtaattcctatgaagtcggcagaatctgcaaagttaagaaaagagattgacgagatacacaagcaagaaggaagattacaattgcttttgataattttaccagaggtcaagaatatatatatggagaaataaagctaatttgtgaaacgcaaataggcattatgacccagtgttgcaagcctgaaaaagtcaaaaaatgttctaaggactttcttcaaagtctcgccctcaagatcaatgttaaggttggcgggatc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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