2024-05-04 17:30:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_057191123 2901 bp mRNA linear PLN 09-JUN-2023 DEFINITION Penicillium psychrosexuale uncharacterized protein (N7518_010197), partial mRNA. ACCESSION XM_057191123 VERSION XM_057191123.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185363 KEYWORDS RefSeq. SOURCE Penicillium psychrosexuale ORGANISM Penicillium psychrosexuale Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 2901) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2901) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2901) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (11-JAN-2023) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026643191). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2901 /organism="Penicillium psychrosexuale" /mol_type="mRNA" /strain="IBT 29551" /culture_collection="IBT:29551" /db_xref="taxon:1002107" /chromosome="Unknown" gene <1..>2901 /locus_tag="N7518_010197" /db_xref="GeneID:81842897" CDS 1..2901 /locus_tag="N7518_010197" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; N-terminal domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_057037259.1" /db_xref="GeneID:81842897" /translation="
MSGRGYDLPIRGGRGGGDRGGSRGRGGGDRGYSGDRGRGSDRGGGRGGGGRGGSEAPSGMLSDPIEAPSTRVQALEDKYVTESAKVRPESNSLARRPGYGTQGRAIVLRANFFPMEFKPNVRFYSYRLKVKPEAKKAQQKFVLDSMFRKYPLFNKGIGVATDGATEIVTTELLPEGREPFTCSMGNGGGHGGGKSKAYTGPWEATLTLDSSYSPAEMMACLENINHREELENEAPCLRVLNILMSAHPYKDTGISIVGKGRNKFFRMDRRKQSMDMKAGAEAVRGYYSSVRVGAGRIFLNLNVSHSAFFRSGMLSELLVAFAQVHGTDRELLNRYLKGVKVYALHLERRENGAGVMEYPVRTILGTATPRDGRPGPNPPQIENLSSSADNVKFWMGDDEKGKYMSITEYFFKTYNRTLKYSKDMPVVNVGTRERPVYLPAEVCEVLPGQCFKPEPSAVQRQNMIKFSCRRPPQNYDSIMTEGLDIMGISGGHTKTVGIKPGREMITVPARILNPPNLLYGGKKTTNPRNGSWNLIGTKFARGASISKWSCLWLRKRGKEDALKNPEIEMDAFYRKLRDHGLTLPPPSKPYLSVLLGPDDRQNRDMIKDAFKKLMREFPFLVVLLPTTEGKIFDYVKYAGDLKTGVLTHCMLSEKFRGANEQYLSNNAMKVNLKMGGCNQLLQPANARFISAAKNTMVVGLDVTHPSSTDPEIFPSVAAIVASTDHNMGQWPGEVRAQTRRQEHIEFLKEMMLTRLSLWQKTNNGNLPQNILVYRDGVSDGQFPMVLTEELPKVQAAAKAVYRGAMPNITIIVCGKRHNVRFYPTNAKDQDRTSNPINGCVVDRGVTRPIYWDFYLQAQAPLQGSARPAHYIVIHDEIFTNPKVNTDRKPADVLQELTHNICYLMGRATRSISYSTPAFLADKFCDRARKYLLAYYHDNNMQVQNEDKFRGTTLAMASACQNSMVYI"
misc_feature 778..930 /locus_tag="N7518_010197" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature <982..1338 /locus_tag="N7518_010197" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1114..1116,1177..1179,1216..1218,1228..1230, 1285..1287,1306..1308,1312..1314) /locus_tag="N7518_010197" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1480..2793 /locus_tag="N7518_010197" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1894..1896,1906..1908,1942..1953,1960..1962, 1984..1986,1993..1995,2005..2007,2017..2019) /locus_tag="N7518_010197" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2101..2103,2107..2109,2323..2325,2761..2763) /locus_tag="N7518_010197" /note="active site" /db_xref="CDD:240015" ORIGIN
atgtctggtcgtggctacgatttgcccattcgaggcggccgtggtggtggtgatcgtggtggctcccgtggccggggtggtggtgaccgcggttacagcggtgatcggggccgtggcagtgaccgtggtggtggtcgcggtggtggtggacgtggcgggtccgaagccccctctggaatgttgtcggacccgattgaagctcccagcacccgggtccaggccttggaggacaagtacgttacggaatcagcaaaggttcgcccagagtccaactctttggctcgacgtcctggctacggcactcaaggtcgtgcgattgtgcttcgcgccaacttcttccccatggagttcaagccgaacgttagattctactcttaccgactcaaggtcaagcccgaggcgaagaaagcgcagcaaaagttcgttctcgatagtatgttccgcaagtaccctctcttcaacaaaggaattggcgttgccaccgatggcgctactgagattgttactaccgagctactccccgaaggcagagagccattcacttgttccatgggcaacggaggcggacatggaggtgggaaatcgaaagcctacaccggcccctgggaagccactttgaccctcgacagctcttactccccggctgagatgatggcgtgccttgagaacatcaaccaccgagaggaacttgagaatgaagcgccctgtctccgagtactgaacatcctcatgagtgctcatccctacaaagataccggcatttccattgtcggcaagggacgcaacaagttcttccggatggacaggcgcaagcagtcaatggacatgaaggctggcgccgaagccgttcgtggttactactcgagtgtccgtgttggtgctggacgaatcttccttaatttgaatgtcagccacagtgcattcttccgttcgggtatgctgtctgagctactcgttgcttttgcccaagttcacggaaccgaccgagagcttttgaatcggtacctgaagggtgtgaaagtctatgccttgcatttggagcggcgagagaacggagctggggtgatggaataccctgtcagaacgatcctcggaactgctactcctcgggatggacgtcctggccccaaccctccacagattgaaaacctctcatctagtgcggacaatgtgaagttctggatgggagatgacgagaagggaaaatacatgagcattaccgaatacttcttcaagacctacaataggacactcaaatacagcaaggatatgccagtggtgaatgttggaactcgtgagcgtccggtttaccttcctgcagaggtttgcgaagtcctccccgggcaatgcttcaagccagagccgtccgctgtccaacgacagaacatgatcaagttcagttgccggcggcctcctcagaactatgactccattatgaccgagggattggacatcatgggaatctccggaggacataccaagacagtggggatcaagcccggcagggagatgatcactgtacctgcacggattttgaatcctcccaatctactctatggcggcaagaagactaccaaccctcgaaacggctcgtggaatttgatcggcaccaaatttgcccgtggcgccagcatcagcaaatggagctgtctttggcttcgaaagcgcggaaaagaggatgccttgaagaatcccgagatcgagatggacgctttctacaggaaattgcgtgaccatggcctgacgcttcctccaccctctaagccgtatctctcagtccttctcggcccggatgacagacaaaatcgcgatatgatcaaggacgcattcaagaagctcatgagggaattccccttcctagttgttctgcttcctaccactgaaggcaaaatcttcgattacgtcaagtatgccggagatcttaagactggcgtccttacgcactgcatgctatccgagaagttcagaggtgccaatgagcagtacttgagtaacaacgcgatgaaggtcaatctcaagatgggaggatgcaatcaactcctgcagccggcgaacgcacgcttcattagcgcagcgaagaacaccatggtcgttggattggatgtcactcatccgtcaagcacagaccccgaaatcttccctagtgttgctgccatcgttgcatccaccgatcataacatgggacaatggcccggtgaggttcgagcccagacacgccgtcaagagcacattgaattcctcaaggagatgatgcttacccggctgagcttgtggcaaaagaccaacaacggcaacctgccccagaatattctcgtgtaccgcgacggtgtcagcgacggtcagtttcccatggtccttacagaggaactccccaaggttcaagctgctgctaaagcggtataccgtggagccatgcccaacatcaccatcattgtctgtggaaagcgtcacaacgtgcgcttctaccctaccaatgctaaggatcaagatcggacatctaacccgattaacggatgtgttgttgaccgcggagtaacccgccctatctactgggacttctatctgcaagcccaggctcctcttcagggttccgctcgtccggctcactacattgtcatccacgatgagatcttcaccaaccccaaggtcaatactgaccgcaagccagctgatgtgttgcaagaacttactcacaatatctgttatctgatgggtcgcgctactcgctcgattagttacagcactcctgccttcctggctgataagttctgcgatcgtgctcgaaagtatctcttggcttactaccatgacaacaacatgcaggttcaaaatgaggataagttcagaggtactaccttggccatggcaagcgcatgccagaacagcatggtctacatctaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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