2024-05-04 20:33:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_057143676 2829 bp mRNA linear PLN 12-JUN-2023 DEFINITION Penicillium odoratum uncharacterized protein (N7520_009742), partial mRNA. ACCESSION XM_057143676 VERSION XM_057143676.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185360 KEYWORDS RefSeq. SOURCE Penicillium odoratum ORGANISM Penicillium odoratum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 2829) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2829) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2829) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (11-JAN-2023) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026643148). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2829 /organism="Penicillium odoratum" /mol_type="mRNA" /strain="IBT 22623" /culture_collection="IBT:22623" /db_xref="taxon:1167516" /chromosome="Unknown" gene <1..>2829 /locus_tag="N7520_009742" /db_xref="GeneID:81795441" CDS 1..2829 /locus_tag="N7520_009742" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; N-terminal domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_056992964.1" /db_xref="GeneID:81795441" /translation="
MSDNPRDRGRIRGDQGYGRGDRRGGCGGGRGRGDMDLTFRERRYGTLGKPVTLYANYMPFTAVGKPVSRYHVAVGKEQGREHFAKYIKNIATDYRSTLISCIDLGLSGDKKYDVRYKGENELDYLDEPEVYSVTVGPTGTLDPTDLINYVSSSSVNGPLMQQDQILAAMNIIIGHQPKTDRSVVTLGGNKHYSFDAATAERMSLGGGLEALRGFFISVRAATARVLLNVQVKYLACYQEGPLPMVLREYTRTNSRNPYRLESFLKRMRVRTTHIVRKTSSGKPRPPQIKSITGLASPSDGRSGTNPPKVARHGAGPFDVQFFLEAPGSKPPAAQAAQHAEGKGKKGKKPAKTGPAPAGQYVSVGDYFKREYKRDLDPNLPVINVGNRQFPVYLPMDVCEVGPGQPVGTKLSPDQTSDMLKFAVMRRKPAQNAQSIVTNGVGMLGLSEPLSATLAAFGVRVDSNLLTVQGRVLVPPKILYAKQREISTTAGSWNMKSIEFSKAVSLKNWTYMYLTTDRARTYWQNGGQMMGSLQKFTSVLRSMGIDAELPKEGQRLALNGRNDAEVIEKSVRELQGRYKPSMILGIFHTKDTTLYNTVKQVCDVRCGVRNVNMQAEKLAQGQDQYCANVGLKINLKLGGGNQTLRNSDLGLFGNGKTMLVGIDVTHPSPGSVGIAPSVAAIVASVDSALAQWPAEFRIQEKRQEMVQDLDALMQSRLKLWAKFNKNKYPENIVVYRDGVSEGQYDLVIEKELPLLKCACEAVYPASDTKRGLPAMSIIIVGKRHNTRFYPTTNADADRSANPMPGTVVDRGVSESKHWDFFLQAHSALQGTARPAHYFTVWDEIFSPQHPGGSGARGAADLLQDLTHKMCYLFGRATKAVSVCPPAYYADLVCTRARCYLSDLFDPSMASTPAASVAGTEGRGQPDFENAIVHSHVKDTMFYI"
misc_feature 145..519 /locus_tag="N7520_009742" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 559..714 /locus_tag="N7520_009742" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 691..1200 /locus_tag="N7520_009742" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(865..867,961..963,1087..1089,1099..1101,1150..1152, 1171..1173,1177..1179) /locus_tag="N7520_009742" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1354..2697 /locus_tag="N7520_009742" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1780..1782,1792..1794,1828..1839,1846..1848, 1870..1872,1879..1881,1891..1893,1903..1905) /locus_tag="N7520_009742" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1984..1986,1990..1992,2206..2208,2665..2667) /locus_tag="N7520_009742" /note="active site" /db_xref="CDD:240015" ORIGIN
atgtctgataacccacgtgatcggggacgaatccgaggtgaccaaggatacggtcgcggcgaccgtcgtggtggttgtggtggtggtcgcggtcggggggatatggaccttaccttccgggaacgccgctatggcacactaggcaaacctgttaccttgtatgccaactatatgccgttcacggcggttggcaagccggtctcccgctaccatgtcgctgtcggcaaggagcagggccgggagcacttcgccaaatatatcaagaacattgccactgactatcgatctacattgatctcgtgcatcgatctggggctgtcgggtgacaagaagtacgatgtgcggtataaaggcgagaatgagctcgattatctcgatgagcccgaggtctacagcgtgactgttggaccgacgggcacgctggatccaacagatctgattaattatgtgtcgtcgagtagtgtcaacggtcctctaatgcagcaagatcagatattggcggcgatgaacattattataggtcaccagccaaagaccgaccggtcggtggtcacgctcggcggtaacaagcattatagctttgatgctgccactgccgaacgcatgtctctgggtggtggtcttgaggcgttacgtggtttcttcatcagtgtgcgtgccgccaccgcccgcgttttgctgaacgtgcaagtcaaatatctcgcgtgctaccaagaaggccctctgcctatggtgcttagagaatatacgcgtacgaattcgcgcaacccctaccgacttgaatcttttttgaagcgcatgcgtgtccgaaccactcatattgtgcggaagacgagcagcggcaagcctcgtcctcctcaaatcaagagcattaccgggttagcatcaccatccgatggtcgttccggcacgaatccgcccaaggtggctcgtcacggtgctggcccctttgatgtccaattttttttggaagcccctgggtcgaaaccgccagccgcacaagctgcgcagcatgctgagggcaaggggaagaaggggaagaagcccgccaagacaggcccagcccccgcaggccagtacgtctctgtcggtgattatttcaagcgagagtacaaaagagacttggacccgaacttgcctgttatcaatgtcggcaacagacaattccctgtgtatcttcccatggacgtgtgtgaggtcggacctggtcagccagtgggaaccaagctctcccctgatcagacatctgacatgctcaagtttgctgtgatgcgacgcaagcctgcgcagaatgctcagtcaattgttaccaacggagtgggcatgttaggtcttagcgagccgttgagcgccacattggctgcctttggtgtccgcgttgatagcaatcttcttactgtccaaggccgtgttctggtgcctccaaagatcctctacgctaagcagagagagatctcaaccaccgccggctcgtggaacatgaaatccattgaattctctaaggcagtgtcgttgaagaattggacatacatgtacctcacgaccgaccgcgcccgtacatactggcaaaacggtggtcagatgatgggatctctgcaaaagttcacgtctgtactccgcagcatgggtatagatgccgagttacccaaggaaggccaacgtctcgcccttaatggtaggaatgatgccgaggtcatcgagaagtccgttcgcgagctgcaaggtcgttacaagccttccatgatcctgggtatcttccacaccaaggataccaccctttacaacacggtcaagcaggtctgcgatgtacgttgtggtgtccgcaatgtgaatatgcaagctgagaagctcgcccagggacaggaccagtactgtgccaacgttggtctgaagatcaacctgaagctcggcggaggaaatcaaacgctcagaaactccgaccttggtctatttggaaacggcaaaacgatgctcgtcggcattgacgttacccacccctcgcctggctcagtaggcatcgcgcctagtgttgcagcaatcgtcgcatccgttgattccgcgctcgcacagtggccggccgaatttcgcatccaggagaaacgccaagaaatggttcaagatctcgacgcccttatgcagtcacgtctcaaactgtgggccaaattcaataaaaacaagtacccagaaaacattgtcgtctatcgcgacggtgtctccgaaggccagtacgaccttgtcatcgaaaaggaactgccactccttaagtgcgcctgcgaagccgtttacccagcttctgacaccaagcgcggtctcccagctatgtccatcatcattgtcggcaagcgccacaacacccgcttctacccgaccaccaatgccgacgctgatcgctctgcgaacccaatgccgggtaccgtcgttgaccgtggtgtctccgagtccaagcactgggacttcttcctgcaggcacactccgcactgcagggaactgcccgcccggcccattacttcactgtctgggatgagattttctctccccagcacccgggtggcagtggagccagaggcgcagccgatcttcttcaggatctgactcataagatgtgctacctcttcggtcgcgcaacgaaggctgtcagcgtctgcccacctgcgtactatgcggatttggtctgtacgcgtgcgcggtgctacctcagtgacctctttgatcctagtatggcttcgacacctgcggcaagtgttgctgggaccgagggccgcggacagcctgattttgagaatgccattgttcattctcatgtgaaggacactatgttctacatctga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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