2024-05-04 18:16:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056955140 3279 bp mRNA linear PLN 06-JUN-2023 DEFINITION Penicillium brevicompactum uncharacterized protein (N7506_005847), partial mRNA. ACCESSION XM_056955140 VERSION XM_056955140.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185303 KEYWORDS RefSeq. SOURCE Penicillium brevicompactum ORGANISM Penicillium brevicompactum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 3279) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3279) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3279) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (14-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026623208). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3279 /organism="Penicillium brevicompactum" /mol_type="mRNA" /strain="IBT 35665" /culture_collection="IBT:35665" /db_xref="taxon:5074" /chromosome="Unknown" gene <1..>3279 /locus_tag="N7506_005847" /db_xref="GeneID:81645395" CDS 1..3279 /locus_tag="N7506_005847" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; Mid domain of argonaute; N-terminal domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_056809474.1" /db_xref="GeneID:81645395" /translation="
MAPKPRPLSPEEQERKSRHESRSSASKPKPAATPSSTSKASSKKPTSTQSPRHSTTSRELPLRGSLPPKPLNPREVQDLREHKARLEQDAKRKRTAEETAWMRRAGIDPATGEKIKPKSTGSSSSDSPIRRVESPEPYPAHWTEEEKLNHERLLKEGVRAAVHEPHRLDKDKIVRHEDYVTIAWDGCKNLDIPWHRFKINDPAAASTTGKIQKRVGYNTSGKEVEMMLNAYPITAFPEKSVYQYEINVLHGSQNETDRRVLRKCWNSETRKARIPDGIWDGGRICWSLEKFERWNEEIVFKGDMARELKTLATVAEFKNNPNLRMSVIPKRRVNLAIIQAWLGGRQDLDLAVIEALSFLDHLLREWPTKQFAAIKRAFFFDKLDEDQELKHEFYKPLANMGASVYRGIYQAIRPTPSGLVLNVDVAHCVFFSRISLMGYMMSANNFSDKQTLVNRLMPERDKYGGPKESKWFAQVNKKIQGLRVALNYEGCPFKMKSFIIKGMLLATPKEYHIDYLDKASGKSTRMNLQEYFTKRYNVRLEFPNMLLVEMTKSDVLYPAEFLVIKSLQRYRYKLSDVEAAQMIQWCATRPQKRLENARQAKEMLRHKDDPILKAYGMKISEKMIRTKARLLPSPEIQFGGNRKHNPGHLGTWDLRGKKFFKGNEKALSRWGVGFFAGHRKSINHDQAIQWTEQFVKIYKAMGGDIHERPVVKPLNEDIGSSVKKLYDEVASRGNGEPQLLIFIVPDKDSWVYLRIKRSADCRYGAPSQVLQAAHCIANKPQYHANVLMKVNAKLGGITARAVPKTKGSGLRPGSMIIGADVTHPMMGVWTPSLAAMSVSANSTATRYMGGCETNGDRVEIIRDQVAEFILRPMVAEWKATVGEGKAPEYVYYFRDGVSASEYRRVLTEEVPSIRNAIAHACSAPSWKGKMCVVVANKRHNLRAFPDSKNRLVSDPNGAPLPGTLIDKDVTSPHDWDFLLYSHIALQGTPRPVHYHVLMDEIGLKPNDLENMINDHCYQYIRSTTSVSVHPAIYYAHLISVRARHHEDVPITSGPQSGPEVKTTNPKPTEARAKRLLPIEGTSNRLALGMWYI"
misc_feature 838..1089 /locus_tag="N7506_005847" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1117..1293 /locus_tag="N7506_005847" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature <1423..1692 /locus_tag="N7506_005847" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1492..1494,1540..1542,1582..1584,1594..1596, 1648..1650,1663..1665,1669..1671) /locus_tag="N7506_005847" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1828..3138 /locus_tag="N7506_005847" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2254..2256,2266..2268,2302..2313,2320..2322, 2344..2346,2353..2355,2365..2367,2377..2379) /locus_tag="N7506_005847" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2458..2460,2464..2466,2683..2685,3106..3108) /locus_tag="N7506_005847" /note="active site" /db_xref="CDD:240015" ORIGIN
atggcaccaaagccaagaccattatcccctgaggagcaagagcggaaatctcgtcacgagagtcgttcctctgcttctaagccgaaaccagcggcaaccccaagctccacttcaaaggcatcctccaagaagcctacttcaacccagtcccctcgccactctaccactagccgtgagcttcctcttcgggggagcctgcccccaaagcctctgaacccacgcgaggtccaagatttgcgtgaacacaaggcccgcttagagcaggatgcaaagcgcaaaagaactgccgaagagactgcctggatgcgcagggctggaattgaccctgcaactggcgaaaagattaagccaaagagcactggttcaagcagcagcgattcccctatccgtcgtgttgagtcccccgagccatacccagctcactggaccgaagaggaaaaattgaatcacgagcgactgctcaaagagggcgtccgagctgcggttcatgaacctcatcggctcgacaaagacaaaattgtcagacacgaagactatgtcaccattgcctgggatggctgcaagaatcttgacattccttggcatagattcaagatcaatgaccctgcggcggcttctaccacaggcaaaatccagaagcgtgttgggtacaacacttctggaaaagaggtcgaaatgatgttgaatgcctaccccataactgcattccctgaaaaatcagtctatcaatatgagatcaacgttctacatggatctcaaaacgagactgacagacgggttctccgcaagtgctggaacagcgaaactcgaaaggcgcgtatcccggatggtatctgggatggcggaagaatttgctggtctctagagaaatttgagagatggaatgaggagattgtcttcaagggtgacatggcccgggagcttaagactcttgccactgtcgcggaattcaagaataatccaaacttgagaatgtctgtgattccaaagcgccgagtcaacctcgcgattatccaagcttggctgggaggtcgacaggatctcgacctcgcagtgattgaagccttgagttttctggatcacttgcttcgcgagtggccgacaaagcaatttgctgctattaagagagcctttttcttcgacaagctcgacgaggatcaggagctgaagcacgaattctacaagccacttgccaacatgggtgcttccgtgtaccgaggtatctatcaggcaattcgaccaacaccaagtggcctagtcctgaatgtagatgtggctcattgcgttttcttttcccgaatcagtttgatgggatacatgatgagcgccaacaatttcagcgacaaacaaacattggtgaacaggttgatgccggagcgtgacaagtatggtggacctaaggagagcaagtggtttgcccaggtcaacaagaagatccaaggcctccgagtggcactgaactatgagggttgtccattcaagatgaaaagcttcataatcaagggcatgctcctggcaacacccaaagaatatcacattgattacttggacaaagcctcgggaaaatcaactcgcatgaatctccaggaatacttcaccaagcggtacaacgttcgtctcgagttcccaaacatgcttttggttgaaatgacgaaatccgacgtcctttacccagccgagttcctggtaatcaagagtcttcagcgataccgttacaagctcagtgatgtggaggcagctcagatgatccaatggtgtgccactcggcctcaaaagcgtctggaaaatgctcgccaggccaaagagatgcttcgacacaaggatgatccgatcttgaaagcctatggcatgaagatcagcgagaagatgattcggaccaaggcccgacttcttcccagcccagagattcagttcggtggtaatcgaaagcataaccctggacacctggggacttgggatctgcgaggcaagaagttcttcaagggcaatgaaaaagcactttcacgctggggtgtgggcttcttcgctggacaccgtaaatcgatcaatcatgatcaggcgattcagtggactgaacagttcgttaaaatttacaaggccatgggcggtgatatccatgaacgaccagttgtcaagcctttgaatgaagacatcggtagcagtgtcaaaaagctctacgatgaagttgcttcacgcggtaacggcgagccccagctcctgattttcatcgttcccgacaaagactcttgggtctatcttcgtatcaagagatctgccgattgtcgatacggagctccttctcaggttctccaggctgcccattgcatcgccaataagcctcagtaccacgcgaatgttttgatgaaggtgaacgcaaagcttggtggaatcactgctcgcgccgtcccgaagacaaaaggatctggtctgcgtccaggatctatgatcatcggagcagatgtcactcacccaatgatgggcgtgtggaccccttcgttggcagcaatgtcagtttctgccaattccacagctacacgctacatgggaggctgcgagaccaatggtgacagagttgaaatcatccgagaccaggtcgctgaattcattctacgtcctatggttgcggaatggaaagccaccgttggagaaggcaaagctcccgagtatgtttactacttccgtgacggtgtctctgcatcggagtatcgccgagtcctcacggaggaggtcccttcaatccgtaatgccattgcacacgcatgtagcgcaccgtcctggaagggaaagatgtgcgtggtggttgctaacaagcgccacaacctccgggcattccctgactccaagaaccgcctggtttcggatccaaatggcgcccctctgccaggtaccttgatcgacaaggacgtcacaagtccccatgattgggacttcctactttacagccacattgcgttgcagggaaccccacgcccggtgcattaccatgtcctgatggacgaaataggcctcaagcccaatgacctcgagaacatgatcaacgatcactgctaccagtacattcgatcgaccacctctgtctcggttcatcccgcgatttactacgcgcatttgatttccgtacgcgcacgtcaccacgaggatgttccaatcacctccggtcctcagagtgggcccgaggtaaagacgaccaaccccaagcccacagaggctcgggctaagcgactgctccccattgaaggcacctctaaccggctagcgctggggatgtggtacatctaa
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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