2024-05-04 17:39:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056937550 2253 bp mRNA linear PLN 06-JUN-2023 DEFINITION Penicillium diatomitis uncharacterized protein (N7539_007949), partial mRNA. ACCESSION XM_056937550 VERSION XM_056937550.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185328 KEYWORDS RefSeq. SOURCE Penicillium diatomitis ORGANISM Penicillium diatomitis Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 2253) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2253) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2253) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (16-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026623183). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2253 /organism="Penicillium diatomitis" /mol_type="mRNA" /strain="IBT 30728" /culture_collection="IBT:30728" /db_xref="taxon:2819901" /chromosome="Unknown" gene <1..>2253 /locus_tag="N7539_007949" /db_xref="GeneID:81627799" CDS 1..2253 /locus_tag="N7539_007949" /note="Argonaute linker 1 domain; N-terminal domain of argonaute; PAZ domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_056787415.1" /db_xref="GeneID:81627799" /translation="
MNSILNSTLEPSLRGGKDCEKWLIEFRTTSAYHGIGDAIPVTEGPNIISRGAHAGRPCDIVDTISSSIRKARFVNVHEKSYRWPIGPWPKDKQLKEAGMVNFQHWVAGMEGWCMWLLTKFGEQEPWTKEEVHVCVAQLRRELQNPYHHVWHRVPASVILTSCQINPAAAAVAVEDLVAESLGTAVVAEDVAEAGEIHRATPFALLIVGAEVISVEPSAVAGVVVIIAAVETSGVAAEVVVLRALESLSEYYCFHGLFPMICLCISRTITLTSKSRSEGKPITPPDATVVKTEDAVAKALVASRQKNAKNATQAYPDRPGYGTLGRPVTLYANYLPFTSVGKLIFRYHVSIAAEGGREPGGRKARHIVRLLLEEHYCANLNSIATDYRSTLISVTKVAEGQFDVRYKDENDEEYPENPKVYKVTIQHTGDINPADLINYLTSTNAGSMLSSMPEIVQALNVILGHHPKSERSVASIGGNRHFSLQEGLKESSSLEGGLEVLRGFFVSVRAATARVLLNVQVKYLACYKSGPLEYVIQEWKASNFRASSYRMEAFLKRMRVCITHIKHKGKNGKERPARIKTISGLATPQDGSSAPNGPKVEGYGAGPYSVKFFLNAPGSQSARPSGGEGKGKKGKKGPPKAGPLPAGQYISVADFFRKEYNITVNPDFPVVNVGTRDKPVYLPVEVCEVEAGQPVKNKLSPKQTQNMLNFAVKGRMPAKNAQSIITKGVGVLGIGQPLNATLVSEPLPRLH"
misc_feature 1147..1386 /locus_tag="N7539_007949" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1426..1581 /locus_tag="N7539_007949" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature <1639..2064 /locus_tag="N7539_007949" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1735..1737,1831..1833,1951..1953,1963..1965, 2014..2016,2035..2037,2041..2043) /locus_tag="N7539_007949" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" ORIGIN
atgaactccatcttgaacagtactctagagccgagtcttaggggcgggaaggattgtgagaagtggttgatcgagttcagaacaacgagcgcttaccacggcatcggggatgctattccagtcaccgaaggtccaaacataatttcgcgtggagcccacgctggccggccgtgtgacatcgtcgataccatttctagcagcatccgaaaagctcgttttgtcaatgtgcatgaaaagagttacaggtggccgatcggaccatggcccaaagacaaacagttaaaggaggctggcatggtcaatttccaacactgggtagccggtatggagggatggtgtatgtggctccttacgaagtttggcgagcaagagccgtggacaaaagaggaagtccacgtgtgtgtagctcagctgcgcagggagctccaaaatccctatcaccatgtttggcacagggttccagcttccgtcatcttgacgtcatgtcagatcaaccccgcggccgcggcggtcgcggtcgaggacctcgtggcggagtctttggggaccgcggtggtcgcagaggacgtggccgaggccggggagattcacagggccacccctttcgcccttctgatcgtgggggccgaggtgatttccgtggagccttccgcggtggccggggtggtggtgatcatcgcggccgtggagacttccggggtcgcggccgaggtggtggtcctcagggccctcgaatctttaagtgagtattactgctttcatggcctctttccaatgatctgtctttgtatttcacgaacaatcactctaacctcaaaatcccgcagtgagggcaaacctattactccgcccgatgccaccgtcgtcaagacagaagacgctgtggctaaggcgctcgttgccagtcgccagaaaaatgcaaagaacgctacgcaggcatatcccgaccggccaggatacggtactctcggtcggcctgttacgctatatgccaactatctgccctttacctctgtgggaaaactaatctttcgctatcatgtctccatcgccgcagagggcggccgggagcctggtggcagaaaagcacgacacatcgtgcgtcttctgctggaggagcactattgtgccaacttgaacagcattgcaaccgactatcgctcaacacttatctcagtgactaaggttgctgaaggccagttcgatgtgcgctacaaggatgaaaacgatgaagaatatcctgagaacccgaaggtgtacaaggtcaccatccaacacacgggtgacattaacccagccgaccttatcaactacctcacttccaccaatgcagggagcatgctgagctccatgcccgagattgttcaggctctgaatgtcattctgggtcatcatccgaagagcgagcgctcggtagcctccatcggcggaaacagacatttcagccttcaagaaggactcaaggagagttccagtctcgagggtggtctagaggtgcttcgcggcttctttgttagtgtgcgagctgccacagcccgtgtcctgctgaatgtccaggtcaagtacttggcctgctacaaatcagggcccttagaatatgtgattcaagagtggaaggctagcaattttagggccagttcctacaggatggaggcttttctgaagcgcatgcgtgtttgcatcactcacatcaagcacaagggcaaaaatggcaaagaaagacccgctcgcatcaagaccatatccggtctggcaactccccaagatggtagctcagcacccaacgggccaaaggtggagggctacggagctggtccctacagtgtgaagttcttcctgaatgctcctggctcacagtctgcacggcctagtggtggagaaggcaagggcaagaagggcaagaagggccctcccaaagctggccctcttccagctggccagtacattagcgttgctgatttcttcaggaaagagtacaacatcactgtgaatcccgacttccctgttgttaacgtcggaacccgtgacaaacccgtctacctccctgtggaggtttgcgaggtcgaggctggccaacctgtgaaaaacaagctctcccctaaacagacacaaaatatgctcaactttgctgtcaaaggccgcatgccagcaaaaaatgctcagtctattatcacgaaaggtgtgggggtattgggaatcggtcagccactgaatgccacactcgtaagtgaaccactgccccgactgcactga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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