2025-04-03 19:45:52, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_056779310 4453 bp mRNA linear INV 04-JUN-2023 DEFINITION PREDICTED: Diorhabda sublineata phosphatidylserine synthase (LOC130444247), mRNA. ACCESSION XM_056779310 VERSION XM_056779310.1 DBLINK BioProject: PRJNA976269 KEYWORDS RefSeq. SOURCE Diorhabda sublineata ORGANISM Diorhabda sublineata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Chrysomeloidea; Chrysomelidae; Galerucinae; Atysites; Diorhabda. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079478) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_026230105.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/30/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4453 /organism="Diorhabda sublineata" /mol_type="mRNA" /isolate="icDioSubl1.1" /isolation_source=">200 individuals were collected in Sfax, Tunisia from Tamarix and have been kept in lab culture maintained by Palisade Insectary since 2008." /db_xref="taxon:1163346" /chromosome="5" /sex="male" /tissue_type="Whole Body" /dev_stage="adult" /geo_loc_name="Tunisia: Sfax" /collection_date="2019-10-15" /collected_by="Dan Bean, Palisade Insectary, Colorado Dep. Agriculture" gene 1..4453 /gene="LOC130444247" /note="phosphatidylserine synthase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 long SRA reads, 8 Proteins" /db_xref="GeneID:130444247" CDS 163..1443 /gene="LOC130444247" /codon_start=1 /product="phosphatidylserine synthase" /protein_id="XP_056635288.1" /db_xref="GeneID:130444247" /translation="
MKTKQPYSPNQRLRLDSFSTINEKPVDDISLQFFYKPHTITLLLISIAGLIYFAFVRDTDNLENNIWAGILCCCFFFLIISVLAFPNGPFIRPHPAIWRLVFGMSVIYLLVCLFVLFQNYQTVKNILSWLDPSLKDFHLDMDKEYGVNCSDITVERIWGHVDIFALGHYLGWMFKAVLIRHMGILWAISCMWEITELAFAHLLPNFIECWWDALILDVLLCNGFGIWCGLKICKILEMREYKWVGIKDIHSTTGKIKRAMLQFTPESWTSVRWLDPKCSYMRIFALCQLVLFWQASELNTFFLKHVFELPSSHFLVTGRLILIGVIVAPSVRQYYSYTTDTSCKRVGTQCWVYGCIMVTESLICIKHGRKLFEQTQIVNMVVWVLIMFIVSVGVVVGCVMWHKYDPDSSNFTPKKTKIQIQTTKDD"
misc_feature 439..1266 /gene="LOC130444247" /note="Phosphatidyl serine synthase; Region: PSS; pfam03034" /db_xref="CDD:460783" polyA_site 4453 /gene="LOC130444247" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggtagcctcaaattatttttaatcatattgtttataaaattagttataattgtgctatgctgagattaataaacgtaatgtttaaccccgagatgttatataaatttaaaacgaattaacgttatataatcaataaacacgacgttcatttctaaataaaaaatgaagacgaaacaaccgtattctcctaatcaaagattaagacttgatagttttagtactatcaatgaaaaaccggtggacgatatatctttacaatttttctacaaaccacatacgataactcttcttttaatatcgatagcaggtctgatttatttcgctttcgtaagagacaccgataacttggagaacaacatttgggcgggaatattatgttgttgtttcttttttttaatcatatcggtgttggcttttccgaacggaccttttatacgtccgcacccggcaatatggcgtttggtattcggaatgagcgtcatctatctactcgtatgcctattcgtattattccaaaactaccagaccgttaaaaacatcctgtcctggttggatccttcgctaaaggatttccatttggatatggacaaggaatacggtgtaaactgctctgatataacagtggagaggatatgggggcacgtggacatatttgctttgggccattacctcgggtggatgttcaaagcggttttgatccggcacatggggattttgtgggcgataagttgtatgtgggagataacggaattggcgttcgctcatctgctaccgaatttcatcgaatgttggtgggacgctttgattttggacgttttgttgtgtaacggcttcgggatttggtgcggtctgaaaatatgtaagatattggaaatgcgcgaatataaatgggtgggaataaaggatattcacagtacgacggggaagataaaacgcgccatgttgcagtttacccccgagagttggacgtcggtgaggtggttggaccccaagtgttcgtatatgagaatattcgcgttgtgtcagttggtgttgttttggcaggcatcggaattgaatacgttttttttgaaacacgttttcgaactaccctcgtcgcattttttagtgaccggtcggttgattttgattggggtgatcgtggccccatctgtgcggcaatattacagttacacgacggatactagttgtaaaagagtcgggactcagtgctgggtgtacgggtgtattatggtaactgaatctttgatttgtattaaacacggtaggaaattattcgaacagactcaaattgtgaatatggtcgtttgggtgttgataatgtttatcgtttccgttggggtggttgtgggatgtgttatgtggcacaagtacgaccccgattcgtcaaattttacccctaagaaaacgaaaattcaaattcaaacaactaaagacgattagagtttctgttgtgataaaacaaattagataattaactcaatatgttaaaatgacatgctctctaattttgtttcttcattttcgtatattttccagtcccaaatcgacagggtgttttgttatatatattttttaaatatttacttttactttcatctttaacctcgtataatttccacaaataacaatttgaacaaactaattattatcctttattttgacccttcttttccttaactaatgacataaaatcaaaatctatatttttcattattacagttttattaaattttataagggagcttgtaaaaatttataaaaatctcactttcaactttaacctcgtataatttccacaaatatgtaattggaataatcgaatttggtcactaatctaaaaccatctttcttctaactaatcccataatattcaaatcagcacccttactggtttcttagttatttgaaattatacgagagtgtgtgaaagtaagttataacattttgaccttgaacttcaacctcgtataatttccacaaataacaatttgaacaaactaattattatcctttattttgatccttcttttccctaactaatgacataaaatcgaaatctataactttccttgtttggaatttattccaatttatacgagagcatgtcaaaattagtctaaaaaaatttaccttgaacttcaacctcgtataatttctacaaatatttaattggaataatcgaatttggtcactaatctaaaagcatcttccctctaactaatctcataatattcaaatcagcacccttactggtttcttagttattgaaattatacgagagtgtgtgaaagtaaggtataaaattttgaccttgaacttcaacctcgtataatttccacaaataacaatttgaacaaactaattattatcctttattttgatccttcttttccctaactaatgacataaaatcgaaatctataactttccttgtttgagatttattccaatttatacgagagcatgtcaaaattaatcttaaaaattttgaccttgaacttcaacctcgtataatttccacaaatatgtaattggaataatcgaatttggtcactaatctagaagcatctttcctctaactaatctcataatattcaaatcagcacccttactggtttcttagttattgaaattatacgagagtgtgtgaaagtaagttataaaattttgaccttgaacttcaacctcgtataatttccacaaataacaatttgaacaaactaattattatcctttattttgatccttcttttccctaactaatgacataaaatcgaaatctataactttccttgtttgagatttattccaatttatacgagagcatgtcaaaattaatcttaaaaattttgaccttgaacttcaacctcgtataatttccacaaatatgtaattggaataatcgaatttggtcactaatctagaagcatctgtcctctaactaatctcataatattcaaatcagcacccttactggtttcttagttatttgaaattatacgagagtgtgtgaaagtaagttataacattttgaccttgaacttcaacctcgtataatttccataaataacaatttgaacaaactaattattatcctttattttgatccttcttttccctaactaatgacataaaatcgaaatctataactttccttgtttgagatttattccaatttatacaggagcacgtcaaaattagtcttaaaaaatttaccttgaacttcaacctcgtataatttccacagttatgaaattgaaaaaactgaagggggtcactaatttagaagcatatttcctctaactaatctcataatattcaaatcagcacccttactggtttcttagttatttgaaattatacgagagtgtgtgaaagtaagttataacattttgaccttgaacttcaacctcgtataatttccataaataacaatttgaacaaactaattattatcctttattttgatccttcttttccctaactaatgacataaaatcgaaatctataactttccttgtttgagatttattccaatttatacaggagcacgtcaaaattagtcttaaaaaatttaccttgaacttcaacctcgtataatttccacagttatgaaattgaaaaaactgaagggggtcactaatttagaagcatatttcctctaactaatcccataatattcaaatccatacctttcctggttttagagttatttaaaataaaacgagagtatataaaaattagtctcgaaaatttttttgtactttaacctcgtataattttcataaatatgcaattgaggaaaccgaatatggtcactaattcagaagcatctttcttctaacaggtgccataagatttaaatccacatctatccttgtttgggatttattcaaatatatacgagagcatgtcaaaattagtcgtaaaaaatttacggtggactttaaccttttataactttcaaaaacatcaaatttcaaggacaaactgtggtcacttatgtagaattatctttcctctgattaattacccataattcagaaccacaagtttcattgtttcatattttatcgaacttatacgaaggcatataaaaattggtgtaaaaaaatttcaccttgaacttaattttatttgtacaaatataaaatttgaaaaatcgaatatgatcatttatttagatctgttttccctctaatcaacgacataaagtcaaaatatgtatctttaatttttttgaaatttttaagagagaatgtggaaatgagtattaattagtttcaacactaccctgtataataaaattaaaacgtgccataacacaaatttataatctctctataaagtattttgtttttttttggtcgattttttgtatatcattccttatagttgataaaaaattatgtaattgttaccaaagatttaaataaaattttgttgttga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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