2024-05-04 22:40:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056679378 3243 bp mRNA linear PLN 02-JUN-2023 DEFINITION Penicillium coprophilum uncharacterized protein (N7500_008234), partial mRNA. ACCESSION XM_056679378 VERSION XM_056679378.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185323 KEYWORDS RefSeq. SOURCE Penicillium coprophilum ORGANISM Penicillium coprophilum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 3243) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3243) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3243) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (01-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026622724). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3243 /organism="Penicillium coprophilum" /mol_type="mRNA" /strain="IBT 35676" /culture_collection="IBT:35676" /db_xref="taxon:36646" /chromosome="Unknown" gene <1..>3243 /locus_tag="N7500_008234" /db_xref="GeneID:81418550" CDS 1..3243 /locus_tag="N7500_008234" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; Mid domain of argonaute; N-terminal domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_056529750.1" /db_xref="GeneID:81418550" /translation="
MASKKAMKPPAEDDEERRARSGHRSTTSSKPPHSSTSSRQPKLSLELPLRPSAAATKPLDPRQIQELRDHKARLEDDAKRRKEAESTAWMRRTRYDPNATEQRKPKSTGSSSSDSPIRRVETPPEFPPNWTAEEKANYERLAREGVKVAVFEQHRLDQEKVVRHQDYMTVAWDGCKNIDIPWHRFKVRPSSTTPEPTHVQRRVGYNSSGKEIEVMMNAYPINSFPDKAVYQYEINVLHGDQNETDRRVLRKCWNSETRKAHIPDGIWDGGRICWSLRNFDDWNELIDIKGDLTRDIKTLATVDEFRRNPAFRMSVIQKRKINLSVINAWLQNRRDLDELVIESLSFLDHLLREWPTKQFAAIKRAFFFDKLGDDEELKQEFYQPLANMGASVYRGIYQAIKPTPQGLILNVDVAHCVFFSRISLMGYMMNVNGWNDKSTLVKNLQSTRDEYGGTRESKWFAQVNKKIQGLRVAPNYEGCPFKMKSFIVKGLIHAKPKEFFIDYYDKATGKSTRIHLEEYFMKRYNIRLEYPNMLLVEMQKEDVHYPAEFLVIKGLQRYRYKLTDVQAAQMIQWCATRPPKRLANARQSKELLQHKNDPILKLYGMKISEQMIKTKARLLPTPEIQFGGNRKHNPQHSGSWDLRGKKFYKPNEKALQAWGVGFFSGHRKSISQDQTLSWVEQFVKMYKSMGGEVTGRPVVKGLSEDVGTSVKKLYDAIAAQNQKEPQLMVFIVPDKDSWVYLRIKKSADCRYGTPSQVLQSAHCIANRPQYHANVLMKVNAKLGGITARAVPKVKSTGLRPGSMIIGADVTHPMMGVWTPSLAAMSVSANSTATRYMGGCETNGDRIEVIRDKVIEYILHPMVAEWKATVGGGKAPEYVYYFRDGVSASEYQRILSEEVPAIRFAIAHACGQAIWSGKICVVVANKRHHLRAFPDPKNRAAADPHGAPLPGTLIDRDVTSPHDWDFLLYTHIALQGTPRPVHYHVLLDEIGLKPNDLEGMINDHCYQYIRSTTSVSVHPAIYYAHLISVRARHHEDVPITSGPQSGPEVKMTNPKPKEPRAKRLLPIEGTSNRLALGMWYV"
misc_feature 802..1053 /locus_tag="N7500_008234" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1081..1257 /locus_tag="N7500_008234" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature <1387..1656 /locus_tag="N7500_008234" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1456..1458,1495..1497,1546..1548,1558..1560, 1612..1614,1633..1635) /locus_tag="N7500_008234" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1792..3102 /locus_tag="N7500_008234" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2218..2220,2230..2232,2266..2277,2284..2286, 2308..2310,2317..2319,2329..2331,2341..2343) /locus_tag="N7500_008234" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2422..2424,2428..2430,2647..2649,3070..3072) /locus_tag="N7500_008234" /note="active site" /db_xref="CDD:240015" ORIGIN
atggcatcgaaaaaggccatgaagcccccagccgaggacgatgaagagcgtagggctcgctctgggcaccgctctacaacatcgtcgaaacctcctcactcctccacatcttctcgtcaaccaaagctcagccttgagcttcccctgcgcccttctgctgccgcgacaaagccactggatccacgtcagatccaagaattacgtgaccacaaggccagactggaagacgacgccaaacgcagaaaagaagcagaaagcactgcctggatgcgccggacccgatatgatcctaatgcgaccgagcagcgaaagcccaagagcaccggttccagtagcagtgactctcccatccgtcgagttgagacacccccggaattcccgcccaactggaccgcagaggaaaaggctaactatgaacgtctcgcaagagaaggggtaaaagtggcagttttcgagcaacacagactcgatcaagaaaaggttgtccgacaccaagactacatgacagttgcctgggatggttgcaagaacattgacattccctggcaccgattcaaagtcaggccttcctctaccaccccagaacctactcatgttcagcgccgtgttggctacaactcttcaggtaaagagatcgaggttatgatgaacgcataccctatcaattctttcccagataaagcggtttatcagtacgagatcaatgttctccatggagaccaaaacgagaccgacagacgtgtccttagaaaatgctggaacagcgagactcgaaaggcacacattcctgatggtatctgggatggtggtagaatttgctggtcgctgcgcaattttgatgactggaatgagcttatcgacatcaagggtgacttgacccgagacatcaaaactcttgctactgtcgatgagttcagaaggaatcctgctttcagaatgtccgttattcaaaaacgaaagatcaacctgtccgtgatcaacgcctggctgcaaaaccgccgtgatctagatgaacttgtgattgaatctctgagtttcctcgatcatttgctccgtgagtggcccaccaagcaatttgctgcaatcaagcgcgcctttttctttgacaagcttggagatgacgaggagctgaagcaggagttttatcagccgctcgccaatatgggtgcttccgtttaccgaggtatctaccaagcaattaaacccactcctcaaggtctaatcctaaatgttgacgtggctcactgcgtcttcttttctcgtatcagtcttatgggctatatgatgaatgtgaatgggtggaacgataagtcgactctggtgaagaatctccagtcaacccgcgacgaatacggcggcacaagggaatcaaagtggtttgcacaggtgaacaaaaagatccaaggtcttcgagtggcacccaactacgagggttgccctttcaagatgaagagtttcattgtcaaaggcttgattcatgcaaagccaaaagagttcttcattgactactacgacaaggccactgggaaatcgactcgaattcacctcgaagaatacttcatgaaacggtacaacatccgccttgaatatcccaatatgctcttggtcgagatgcaaaaggaagatgtccattaccccgccgagttcctcgtcatcaaaggtctccagagataccgctacaagcttaccgatgttcaggcagcacagatgattcaatggtgtgcaaccaggcccccgaaacgtttggccaacgctcgtcagtccaaggaacttctccaacacaagaatgatccgatcctaaagctttatggcatgaagatcagtgaacaaatgatcaagacaaaggctcgcctacttccaacccccgagattcagtttggaggcaaccgcaagcataaccctcagcattcaggaagctgggatctccgaggtaagaagttttacaaacccaatgagaaggccctccaagcttggggtgtcggattcttttccggacatcgaaagtcgattagccaggaccagactctcagctgggttgagcaattcgtgaagatgtacaaaagcatgggtggtgaggtgactggtcgaccggttgtcaagggattaagtgaagacgttggcaccagtgtcaaaaagctgtacgatgcgatcgcagcgcagaaccagaaagagccccagctcatggtgttcatcgttcccgacaaggactcttgggtctatctccgcattaaaaagtctgccgactgtcgatatggcactccctctcaagtgctccaatctgcacactgcatcgccaatagacctcagtatcacgcgaatgtcctcatgaaggtgaatgcaaagcttggtggtatcactgctcgagctgtccccaaggtgaagagtacaggtttacgcccaggttccatgatcattggggcagacgtcactcatccaatgatgggtgtgtggaccccgtcgttggcagccatgtcagtttcggcaaattccaccgcaactcgctacatgggtggatgtgagaccaatggagatcgaattgaggttatccgggacaaagtgattgaatacattctgcatcccatggttgctgagtggaaagcgactgttgggggtggcaaggctcccgagtatgtctactatttccgcgacggtgtgtctgcgtccgaataccagagaatcctttcggaggaagtccctgcaatccgctttgcaattgcacatgcgtgtggtcaggcgatctggagcggcaaaatctgtgttgtggttgccaacaagcgccatcatcttcgagcgttccccgaccccaagaatcgtgcagccgcggacccccacggcgcccccctgccaggcactctgattgatcgagacgtgactagcccacacgattgggacttcctgctctacacacacattgctctgcagggtactccccgtccagttcattaccatgtcctgctggatgagattggtctcaagcccaatgaccttgagggcatgatcaatgatcattgttaccagtacatccgctcgacaacgtctgtgtctgtccaccctgctatctattatgcccacttgatttcggttcgtgcgcgccaccacgaggacgtgcccattacatccggcccccagagtggcccagaggtgaaaatgacaaacccaaagcccaaggagccccgagcaaagagattgcttcccattgaaggcacctcaaacaggctggctctgggtatgtggtacgtctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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