2024-05-04 22:59:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056650820 3084 bp mRNA linear PLN 02-JUN-2023 DEFINITION Penicillium alfredii uncharacterized protein (NUU61_000236), partial mRNA. ACCESSION XM_056650820 VERSION XM_056650820.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185292 KEYWORDS RefSeq. SOURCE Penicillium alfredii ORGANISM Penicillium alfredii Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 3084) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3084) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3084) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (15-NOV-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026622698). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3084 /organism="Penicillium alfredii" /mol_type="mRNA" /strain="IBT 34128" /culture_collection="IBT:34128" /db_xref="taxon:1506179" /chromosome="Unknown" gene <1..>3084 /locus_tag="NUU61_000236" /db_xref="GeneID:81389988" CDS 1..3084 /locus_tag="NUU61_000236" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; N-terminal domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_056515670.1" /db_xref="GeneID:81389988" /translation="
MASICRSARQPTEGISVAVETVAVETEAVGTKAVETSEVAAEENSVAEAVAVVSVEDVEIKVHAFLGLDGQSIPAPDARVEKTENAVAKTLAVERQKTPSQARYPQRPGYGEAGKPVTLYANYLPLEVSSKSLFRYHVDIAADAGGRQPVGKKARQIVRLLLEEHFLQQKAGIATDYRSTIISCTELPQTEQYDVRYKDDIEGDYPENPKVYQVTCQYTGQLDPADLVNYLTSTKAGAMLESKAEIVHILNLLMGHYPKTDSSVVSVGANKHYGLHPGSIDRGSLGAGLEVLRGFFISARAATARVLLNIQVKYLACYQEGPLAMVIGEFQRENTRNIYRLEAFLKRLRVRITHITRKTSSGKPRPRVKAIASLATRADGASSPNPPKITRHGAGPRDVQFFKAAPESQPAQGTESKGKKGKKGKKAPPKAGPPQAGRYISVEEFFKTEYNRALDPNMPVVNVGTREKPVYLPVEVCEVEAGQPVGTKLNASQTANMLAFAVRGRKPAENAQSIVTKGVDLLGLGEPLNKTLSTFGVQPSTELITVHGRVLGAPKIYYKDTKLAQKAVIAMFGSWSMRQIRFTRPVTMKSWTWLYIDAPGARNLWPSPNALNESLMELTNNLRDLGIAADSSKPGTRIQLTGNNDAAAIESAVRNLQEKHQPSLILGILYGKDIALYNCIKQVCDVRCGVRNVNVLAEKFRGANDQYCANVGLKINLKLGGVNQSLNTSDLSFISEGRTMLVGIDVTHPSPGSSSSAPSVAGVVASVDSSLAQWPAEIRIQTARQEMVADLDTLLRSRLQHWARCNENRFPENIVVYRDGVSEGQYDIVLDRELPQLKSACAALYPAKDTARGLPHLAIVVVGKRHNTRFYPTRDADSDRSANPSPGTVVDRGISEARHWDFFLQAHAAMQGTARPAHYFTVWDEIFHPRYPGSAGVPGAADVLQDLTHKLCYLFGRATKAVSVCPPAYYADLVCTRARCYLSGFFDPTPAATPAGSVVGSAGDASAAANSSDVEIHPNVRDSMFYI"
misc_feature 493..762 /locus_tag="NUU61_000236" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 802..957 /locus_tag="NUU61_000236" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 958..1437 /locus_tag="NUU61_000236" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1105..1107,1201..1203,1324..1326,1336..1338, 1387..1389,1408..1410,1414..1416) /locus_tag="NUU61_000236" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1588..2946 /locus_tag="NUU61_000236" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2029..2031,2041..2043,2077..2088,2095..2097, 2119..2121,2128..2130,2140..2142,2152..2154) /locus_tag="NUU61_000236" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2233..2235,2239..2241,2455..2457,2914..2916) /locus_tag="NUU61_000236" /note="active site" /db_xref="CDD:240015" ORIGIN
atggcctcgatctgccgttccgcccgtcagccgaccgaggggatttccgtggccgtggagaccgtggccgtggagaccgaggccgtggggaccaaggctgtggagacttcagaggtcgcggcagaggagaattcagtggccgaggcggtcgcggtggtttccgtggaggacgtggagatcaaggtccacgcatttttaggtctggatggacaatcgattccagctcctgatgcacgggtcgagaagactgagaatgctgtggctaagaccttggccgtcgagcgccagaagacgcctagtcaagctcgatatccccagcgaccaggctacggggaagctggcaagcctgtgacgctgtatgcgaactacttgccactagaggtgtccagcaagtcactgtttcgataccatgtggatatcgcggccgatgcagggggccgccagccggtcggtaagaaggcccgtcagattgttcgccttttactcgaagagcacttcttgcagcaaaaagctggcatcgcgacagactatcgctcgacgattatctcatgcaccgagctgccccaaaccgagcaatacgacgtgcgatacaaggacgacattgaaggcgactaccctgagaaccccaaagtgtatcaagtaacctgccagtacacgggacagctcgacccggctgatttggtgaactacctaacctccactaaggctggagcgatgctggagtcaaaggctgagattgtgcatatcctgaacttgcttatgggtcactaccctaagaccgatagttcagtcgtctcagtcggcgcgaacaaacactacggtctccacccgggctctattgaccgcggtagcttaggtgccggtctggaagtactccgtggcttctttatcagtgcgcgtgccgccacagcccgtgttctgctgaatatacaggttaaataccttgcttgttaccaagaagggccgctggctatggtgattggcgagttccaacgcgagaatacccgaaacatctaccgtctcgaggccttcctcaaacgtctacgagttcgtatcacgcatatcactcgaaagactagcagtggcaagcctcgaccccgtgtgaaggccatcgcaagtctggctacccgtgccgatggtgcttcatcccccaacccgcccaagattacgcgccatggtgctgggccgcgtgacgtgcagttctttaaggctgctcccgaatcccagcctgcacagggtacggaatcaaaggggaagaaggggaagaaggggaagaaagctcctcccaaagcaggcccgccccaagccggccgctatatcagcgtggaggaattcttcaagactgaatacaatagagcgctggaccccaatatgccagtggtcaacgttggaactcgcgagaagcctgtttatctgcccgtggaggtctgtgaggtggaggcaggccagccagtcggtaccaagctcaacgcaagccagacggcaaacatgctcgcatttgctgtgagaggtcgaaagccagccgagaacgcgcaatcgattgtgactaagggtgtggacttactgggcctgggagagccgttgaataagactctgtcaacttttggggtccagccatcgactgagctgatcaccgtgcacggaagggttttgggcgctcccaagatctattacaaggacacgaagttggcccagaaggccgttattgccatgttcggtagctggagcatgcgccagattcggttcacgaggcctgtgactatgaagtcctggacctggttgtacatcgatgctcccggggcgcgtaacttgtggccaagtccaaacgcgctcaatgaatctctgatggagctcacaaataacttacgtgacctcggtatcgcagccgattccagcaagcccggcacgcgaatccagctgacgggcaacaatgacgcagccgcaattgagtcggcagtgcgtaacctgcaagaaaagcaccagccctcgcttattcttggaatcctctacggcaaagacatagcgctgtacaactgcattaagcaggtctgcgacgtccggtgtggcgtacgtaatgtcaacgtgctcgctgagaagtttaggggcgctaacgaccagtactgtgcgaacgtcgggcttaagatcaacctaaagcttggcggggtgaaccaatctcttaacacctctgacctttcttttatctctgagggtcgcactatgcttgttggtatcgacgtcacgcacccttcgcccggatcgtcgagctcggctcccagcgtagcgggtgtcgtagcctcggtcgattcgtcgctggcgcagtggcctgcagagatccgtatccagacagcgcgccaggagatggtagcagacctagacacactgctacgctcacggctgcaacactgggcacgatgcaacgagaaccgcttccccgagaatatcgtcgtataccgcgacggcgtctccgaaggccagtacgacatcgtgctcgaccgcgagctgccacagctcaagagcgcctgcgccgccctttacccagccaaggacacagcgcgcgggctgccacatctcgcaatcgtggtagtcggtaagcgccacaacacgcgcttctacccaacgcgcgacgccgactccgaccgctccgccaacccgtcccccggcaccgtcgtcgaccgcggtatctccgaggcccgccactgggacttcttcctgcaagcccacgccgctatgcagggcaccgcccgccccgcgcactatttcactgtctgggacgagatcttccacccgcgctacccgggctccgccggtgtccccggagccgcggacgtcctgcaggatctcactcacaaactgtgctatctattcggtcgcgctactaaggctgttagcgtgtgtccgcctgcgtactacgctgaccttgtctgcactcgcgcccgctgctatcttagcggcttcttcgaccctacccctgcggctactccggctgggagtgtcgttggtagtgccggggacgcatcggctgcggcgaacagcagcgatgtggaaatccaccctaacgtgcgcgactcgatgttctacatctaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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