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2024-04-28 02:37:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_056173154            3165 bp    mRNA    linear   PLN 19-MAY-2023
DEFINITION  Trichoderma breve NRDE-2, necessary for RNA interference
            domain-containing protein (T069G_05944), partial mRNA.
ACCESSION   XM_056173154
VERSION     XM_056173154.1
DBLINK      BioProject: PRJNA973574
            BioSample: SAMN30971524
KEYWORDS    RefSeq.
SOURCE      Trichoderma breve
  ORGANISM  Trichoderma breve
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae;
            Trichoderma.
REFERENCE   1  (bases 1 to 3165)
  AUTHORS   Lin,R. and Liu,T.
  TITLE     Chromosome-level assembly of Trichoderma breve T069, a fungus used
            in development of biopesticide product
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3165)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3165)
  AUTHORS   Lin,R. and Liu,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2022) School of Plant Protection, Hainan
            University, No 58, Renmin Avenue, Haikou, Hainan 570228, China
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_079234).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3165
                     /organism="Trichoderma breve"
                     /mol_type="mRNA"
                     /strain="T069"
                     /isolation_source="soil"
                     /db_xref="taxon:2034170"
                     /chromosome="3"
     gene            <1..>3165
                     /locus_tag="T069G_05944"
                     /db_xref="GeneID:80867842"
     CDS             1..3165
                     /locus_tag="T069G_05944"
                     /codon_start=1
                     /product="NRDE-2, necessary for RNA interference
                     domain-containing protein"
                     /protein_id="XP_056030012.1"
                     /db_xref="GeneID:80867842"
                     /translation="
MASPDEQDVKLSVPKFSSFKSKDARKENPQKLEKQHEIRRKRHDRDDERSSSRRSHEDRGSRRSGQESRRHRDRDRDLDRDRDRTRREPSIQGVPGLFVIDTNGDPLIIKYGGIDRSQVPAYRRYGGGRVLGTEGRLVIHRDGPRDQFSLRMPGEGFHTFSGRDGLRSKMPRVESRPIRALTRRSDADVADEAEGYLSLSSSKKRKRDQRDEESSDDERPSYRDSDEDSDMSIDMLAADRSNPLKQKSIRLSKQVKDTPEDIDAWLELVDHQDALLKAGEDLDHAVLENEAHSFAEIKVYMLESALKNTQSVKDRRRVLVYLMREGAKVWTSKVTMKKWSEVLESDDDDFPLWKTHLDFLTSNITTFQYDDIKKLLLDRLCLTLSRLTSDQPKEAIEEAIFVFLRATRFIHDAGYKELAIAAWQGLLELSFFRPLSMESEQSALESFHDFWESEVPRIGDVGAKGWRHYVETGSDDDAAEPVQAAQIAPSSSRDVYKAWAHLEHSRSQAAKMPARTMDDGTDDDPFRVVMYSDIQPLLFLIPSSVLPEVSTQLIDAFLLFCGFPPAFRASSWTEMAYGDQFVSSSLIRVDLQPVKHNDDETENWHKSEPRFGMGVKAAASTHLLFGGSRWFQYVPANSQNPIVSSLWASEALRQLVHIGGMEELAQYYLATVFSNEQTSVKKPAKALLKQYPANSELYNAYAVAESANDLSVASRVLGAAIESSSLSSKWHKFLFHGSWSWMEFEAGNIDLAKVRLCASVDENLKVTGSDILEIGSTTLLKAHQTFISDFHEYLLGRDLVGASVLAECMILLSYLTASGNLEPASISQGNIAAAMNTVDMISQEFRSQDQAGSAVHERVLQYASRLLYLHASKGPFRRVYLREKLSGFIRQFPQNSVFLSMFEWSDASLRVIDETRGLLYDQVLVKQHDCISSRVFAIQHELTHGNANTAKIAFEQALASDTCQNSPALWIFYIRFCQMQFCTKAKDVFYRALRHCPGSKEVMMEAFFTLLRNMESEELRAVYNTMTSKGMRVHVDMEEFLERRRAESLREKKR"
     misc_feature    751..1686
                     /locus_tag="T069G_05944"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
atggcctcaccagacgagcaagacgtaaagctcagtgtgccgaaattctcctctttcaaatccaaggatgcacgcaaagagaaccctcaaaagcttgagaaacagcatgagattcgccgcaagaggcatgatcgtgatgacgagagatcaagcagccgccggtctcatgaggatcgcggctcaaggcgcagtggccaggagtctcgtcgccatagagaccgcgaccgggatctagacagagacagagatcgaactcgtcgagagccttctattcagggtgttccaggcctctttgtgattgatacaaatggcgaccccttgattataaaatatggcggcattgacagatcacaggttcctgcttaccgtcgctatgggggcggcagagtccttggtacggagggtcgcctagtcatccatcgtgatggcccaagggatcagtttagtctccgcatgccgggcgaaggcttccacacattttccggtagagatggtcttcgatccaagatgccaagagtggaatctagaccaatcagagcactcaccaggaggagtgatgctgatgtcgcggatgaggctgaaggatacctatccttgagttcatctaaaaaacgaaagcgtgatcagcgagatgaagagtcctcggatgatgaacgcccttcatatcgtgactcggatgaggactcggacatgtcaatcgacatgctggcggcggatcggagcaatccactgaagcaaaagtccataaggctcagcaagcaagtaaaagatacaccagaggatatcgatgcctggctagagcttgtagatcaccaagatgctttactgaaagccggagaagatctggatcacgcggtattagagaacgaggctcatagctttgcagagattaaagtatacatgctcgagtcggctcttaagaacacacagagtgtaaaagaccgcaggcgagttctcgtctacctgatgcgagagggtgccaaagtgtggactagcaaagtgaccatgaagaaatggtcagaagttctggaaagtgacgacgatgatttccccctgtggaaaactcaccttgactttttgacgtccaacattacaacatttcaatatgacgacatcaaaaaattgcttttagacaggctatgccttaccctctcccgcctgacatcagatcaacccaaagaagccattgaagaagccatatttgtgttcctgagggccactcgtttcatccatgatgctggctacaaagaactggctattgcggcgtggcagggtctcttggagctcagcttctttagacccctgagcatggaaagcgagcagtctgcgctagagtcgttccacgacttctgggaaagcgaggttcctcggataggcgacgtcggcgcgaaaggttggagacattacgtcgaaactgggagcgatgatgatgccgcagagccggtacaggctgctcaaattgcaccctcttcctcacgagatgtttacaaagcctgggcccatcttgagcactctcgctctcaagccgcaaagatgccagcgaggactatggatgatggcacagatgatgatcctttcagagtcgtaatgtactctgacatccaaccacttctctttctcataccaagttctgttctaccagaggtttcgacgcagctgattgatgcatttctactcttctgtggctttcctccagcatttcgagcaagtagttggacggaaatggcctatggcgatcagttcgtctcatcgtcgctcatcagggtcgacttacagccagttaagcataatgacgacgagacagagaactggcataagagcgaaccgcgatttggaatgggcgtaaaggcggccgcttctactcatttactgtttggcggctcaagatggtttcagtacgttcctgccaactctcagaatcctatagtgagctcgctctgggcatcagaggcactgaggcagcttgttcacattggggggatggaagagctggctcaatactaccttgctacagtcttttcgaatgagcaaacgagcgtcaagaagcctgctaaagccttgctcaaacaatatcccgcgaattccgagctttataatgcatatgcagttgctgaatctgccaacgatctcagtgtggcgagtagagtgctgggggctgcaattgagtcttcgtcgctgtcttcgaagtggcataaattcttgtttcatggaagctggagctggatggagtttgaggcgggaaacattgacttggcaaaagtgcgtctctgtgcgtccgtagatgagaatctgaaggtgacggggtcggatatcctcgagattggcagtaccacgcttctcaaagcccatcaaacatttatttcggatttccacgaatacctactcggtcgagacttggttggagccagcgtactcgccgaatgcatgattttactatcatatctcacggcatcgggaaatttggagcccgcgtcaatttcacaaggcaatatcgctgctgcgatgaacactgttgatatgatatctcaagagtttcggtcccaagaccaagccggctccgcggtgcacgagcgtgtccttcagtatgcttctcggctgctatatctgcatgcatcaaagggaccattccggagagtgtacctgcgcgagaagctgtcaggtttcattcggcagtttccgcagaattcagtcttcttatccatgtttgaatggtctgatgcgagccttcgggtcattgacgagacgcgtggccttttgtatgaccaagttctagtgaagcagcatgactgcattagcagccgcgtgtttgccattcaacacgagcttacacatggcaacgctaatacggcaaagattgcatttgagcaagctctggcgagtgacacctgtcagaacagtcccgcattgtggattttttacattcgattctgccagatgcagttctgcacaaaggcaaaggatgtgttttaccgggctttgaggcactgccctggatcgaaggaggtgatgatggaggctttttttaccttgcttcgtaatatggaatcggaggagcttagggcggtgtataacaccatgacgtcaaaggggatgagggtgcacgttgacatggaggagtttcttgagaggcgtagggcggaatcattgagagagaagaagagatga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]