2024-09-08 11:57:39, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_056122748 4564 bp mRNA linear MAM 09-OCT-2023 DEFINITION PREDICTED: Sorex fumeus argonaute RISC catalytic component 3 (AGO3), transcript variant X3, mRNA. ACCESSION XM_056122748 VERSION XM_056122748.1 DBLINK BioProject: PRJNA972655 KEYWORDS RefSeq. SOURCE Sorex fumeus (smoky shrew) ORGANISM Sorex fumeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026606104) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_029834395.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/04/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4564 /organism="Sorex fumeus" /mol_type="mRNA" /db_xref="taxon:62283" /chromosome="Unknown" gene 1..4564 /gene="AGO3" /note="argonaute RISC catalytic component 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:130031410" CDS 166..2046 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X2" /protein_id="XP_055978723.1" /db_xref="GeneID:130031410" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 166..507 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(301..303,346..348,388..390,400..402,454..456, 475..477,481..483) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 640..1917 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1051..1053,1063..1065,1099..1110,1117..1119, 1141..1143,1150..1152,1162..1164,1174..1176) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1255..1257,1261..1263,1471..1473,1885..1887) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
ggaagtggttgactcaatggttcagcattttaaagttactatatttggggatcgtagaccagtttatgatggaaaaagaagcctttatacagccaatccacttcctgtggcatctactgggtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgatattcataatattgatgaacaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagattaaaggtctgaaggttgaagtaactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaacggccaaacagtggaaagaacagtagcacagtatttcagagaaaaatacactcttcagttgaagtacccacaccttccctgtctgcaagtgggacaggagcagaaacatacatacctgccgctagaagtctgtaatattgtggcaggacagcgatgtattaagaagctaacggacaatcagacttccacaatgatcaaagccacagcaagatctgcacccgatagacaagaagagattagcagattggtaagaagcgcaaattatgaaacagatccatttgttcaggagtttcagttcaaggttcgggatgagatggcccatgtaacaggacgtgtacttccagcaccgatgcttcagtatggaggacggaatcggacagtagcaacaccaagccacggagtctgggacatgcgagggaaacagttccacacaggagttgaaattaaaatgtgggcaatagcttgttttgccacacagaggcagtgcagagaagaaatattgaagggtttcacagaccagctgcgtaagatttctaaagatgcaggcatgcccatccagggccaaccttgcttctgcaagtacgcacaaggtgcagacagcgtggagcccatgttccggcatctcaaaaacacttactctgggctgcagctcatcattgtcatcctgccaggaaagacaccagtgtatgcggaagtgaaacgtgtaggagacacacttttggggatggcgacccagtgtgtccaagtcaagaatgtaataaaaacttctcctcagactctctcaaacctgtgcctaaagataaatgttaaacttggagggattaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatatttttaggagcagatgtcactcatccacccgctggtgatgggaagaagccttccattgctgctgttgtaggtagtatggatgcccaccccagcagatactgtgccaccgtcagagttcagagaccccgacaggagatcatccaggatctggcttccatggtccgagagctgctcattcagttttataagtcaactcgcttcaaacctacgcgcatcatcttctatagggatggtgtgtcagagggacaattcaggcaggttttatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagaggcatcacactcgattattttgtgccgataggacagaaagggtcggaagaagtgggaatatcccggctggaaccacagttgatacagatatcactcacccatatgagtttgacttttacctctgtagccatgccggaatacagggtaccagtcgcccttcacactatcacgttttatgggatgataactgctttactgcagatgaacttcagctgctcacttaccagctctgccacacctacgtgcgctgtacacgatctgtttctatacctgcaccagcttattatgctcacctggtggcattcagagccagatatcatcttgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatggtcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatttgctttgagcagaagaactgaagatgcatcaatgtgcaacgttcaccgtgtgtttcccatggaatcagtttgggggggtaggggcgatgcctccagccatccggaagccaacactgtgcgggggtcgggtctgatctttgtgccgatagaagtacgattgtttacttcatcaaggaaaacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcagtctcctgtaggaaatactgcgattgttctgttttcgttttcttatagtctaatcctttcaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaaaacaaaaacaaaacaaaaaaaagttgatggtttaaaaaaaaacccacctacagtgaataatcaaagtgatttttcacagctctgtgtgcaaaaaaattaatgtggattcatgtcttgtcaaaagtatattttaaatatatacatactttatatgcatatatatctgcttctacgttgataatagatatatatgtatcagtgtatatatttcatgtgcattccaatgggggaactttagtccctatccctgtaccctcaccaccgctttcctttctctctctctacctccctggccaacattacctacatttacccccccaagtgacatttcagtgttcatgtatgtggttcatttgtatatgaagcatggaaaattttatttttatttttcacagcctactcttgtctcttctctcatagacaattctgagtcccaaaatcttgataatgttttcttaagaaacagaattatcttctatagatgttttcgtgagaatgtgtctgccccacctgctttgaagttacattcgccccgtgtacggtgtgtacagaaatagcagtgacctgttgttttcctttattcttttattcagttaaagctgctataaatataaaaccttgtcagtagtggtaatactttctctctacaagtattatgtacacaaaagctttctgtttctgttgtttctacatggaaatcccttaaagcttttttataaacagcaaatattttaaatgaacagtcaggcagcctctcaaattgggtagaaagagagaaggggttgtttgaggggtcctgtcatttttttttctttcctagtttacttgctgcctctcataccttaatgtgattttcatatatatatttttatatatatgtgtatatatatataaacatatatgtatgttttgaagtttagctttcttttctatatattagaatagtgctttaataattataggattgtattgcaacatttttatagagatataatcatgtttattttaagaactgacagttgtttttgctatcttttggtgcaataagcagttttaaaggaaagtggtgtctctatgacatctttgccacagatagtgggagaagcgggcacctttataattttaattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaattttcaaatttaatgcatgccttttaaaaattataatgaaaatgaaggaagttgaatttcctaaatgagtctgacttggaatattagaaataaagttgaactttgacagtgaacagcttaagattaagaggacatttaaattatttggaaagagatcattttttattgaaggctgatagtggctaagtacccatttttgtgtattgaaataaatcggaaagatataaaaatgattctattttttggtttaggggcctcacccagaggtgttcaggggctatttccagtgctcccagttcagggctactggcagtgcttggggtaccctgtggtactagagatagaactggggatttctgcatgctctacatatgcactaaccttttgagatttatccctggcccttaaaatgatatttttaaaaacagttttttcagttatcacctgcgtgactttgcttttaaaattagggtgatgatggcaaaagaagttagaatgtcagtaactttgagttaagtcacagaaatgtagaagataagttttgcaaaacttttgatcagttttactgatactaaaaagtactataaagctgtcaaaaccaacttcattggtaacattggatttaggagagctttgcactttgtaactcataaaaactgcattaaatttttcttttttgcactagttcaaagcatagatattatagattgtttccagtgggcattgttgctgacttttcagaatatatctgcatgtgaaaaggaatggtgatttttttagtttctattatctgtaatccactcattgccaatttactgtattttgagcctaaaatctgagcccctgtcctccaacaggtatgaaatctttgtccctctgccataaaaatgagaaagtactgtattttgtatgtttattatatagaagtgtctgaaatgcggttgacaacactattccagagctctttacatgcgatgatacttgtgtagt
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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