2024-05-04 20:36:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_055593903 1876 bp mRNA linear ROD 26-APR-2023 DEFINITION PREDICTED: Psammomys obesus vimentin (Vim), mRNA. ACCESSION XM_055593903 VERSION XM_055593903.1 DBLINK BioProject: PRJNA961108 KEYWORDS RefSeq. SOURCE Psammomys obesus (fat sand rat) ORGANISM Psammomys obesus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Gerbillinae; Psammomys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026596149) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_907164565.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/24/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1876 /organism="Psammomys obesus" /mol_type="mRNA" /db_xref="taxon:48139" /chromosome="Unknown" gene 1..1876 /gene="Vim" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins" /db_xref="GeneID:129666666" CDS 147..1547 /gene="Vim" /codon_start=1 /product="vimentin" /protein_id="XP_055449878.1" /db_xref="GeneID:129666666" /translation="
MSTRSVSSSSYRRMFGGSGTSSRPSSNRSYVTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
polyA_site 1876 /gene="Vim" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gcccttggcggggtccagtcctctgccactcgcgctccgggaccacagagacagcggcgctcccacggttcgcatccaccgtgctctcgctcttctctcggagccagccctcgcagccgcagcagcccagcccatcctccgaagccatgtccaccaggtccgtgtcctcgtcctcctaccgcagaatgttcggtggctccggcacctcgagccggccgagctccaaccggagctacgtgaccacatccacccgcacctacagcctgggcagcgcactgcgccccagcaccagccgcagcctctattcctcgtcccccggcggcgcctatgtgacccgctcctccgccgtgcgcctgcggagcagcgtgccgggtgtgcggctgctgcaggactccgtggacttctcgctggccgacgccatcaacacggagttcaagaacacccgcaccaacgagaaggtggaactgcaggagctgaatgaccgcttcgctaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctgaagggccagggcaaatcgcgcctgggcgacctctatgaggaggagatgagggagctgcgccggcaggtggatcagctcaccaacgacaaggcccgcgtcgaggtggagcgggacaacctggcggaggacatcatgaggctgcgggagaaattgcaggaggagatgcttcagagggaagaagcggagagcaccttgcagtccttcagacaggatgttgacaatgcatctctggcccgccttgaccttgaacgtaaggtggaatccttgcaagaggagattgcctttttgaagaaactgcatgatgaagagatccaggagctgcaggcccagattcaggaacagcatgttcagatcgatgtggatgtttccaagcccgacctcactgctgccctgcgtgatgtccgtcagcagtatgaaagtgtggctgccaagaacctccaggaggcagaggaatggtacaagtccaagtttgctgacctctctgaagctgccaaccggaacaatgatgccctgcgccaggcgaagcaggagtcaaatgaataccgaagacaggtgcagtccctcacctgcgaggtggatgcacttaaaggaactaacgagtccctggaacgccagatgcgtgagatggaagagaattttgcccttgaagctgctaactaccaggacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggctcgccaccttcgtgaataccaagacctgctcaatgttaagatggctcttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcttccctgaacctgagagaaactaatctggaatcactccctctggttgacacccactcaaaaagaacacttctgattaagacggttgaaaccagagatggacaggtgatcaatgagacttctcagcatcacgatgaccttgagtagaaactgcacagactcagtgcaacagcgcagtaccagcaagaggaagaagaaaaaaaagaaattgtattttagggaaacagctttcaagtgcctttactgcagtttttcaggagcacaagataaattggggatagaaataagctctagttcataacaactgacacccttaaaagacgtagggtaggtttgccacataatctagtttatgaagaaatcttgtgctagaatactttttaaagtatttttgaataccattaaaactgcttcccctcccccccccagtaaatatctgaccaacttgttactgcttcaataaatcttcagaaata
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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