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Previous release (v1)
2026-09-24 09:39:39, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XM_052992416 2579 bp mRNA linear INV 14-JAN-2023 DEFINITION PREDICTED: Drosophila gunungcola protein argonaute-2-like (LOC128259818), transcript variant X2, mRNA. ACCESSION XM_052992416 VERSION XM_052992416.1 DBLINK BioProject: PRJNA922093 KEYWORDS RefSeq. SOURCE Drosophila gunungcola (fruit fly) ORGANISM Drosophila gunungcola Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026453181) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_025200985.1-RS_2023_01 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2579 /organism="Drosophila gunungcola" /mol_type="mRNA" /strain="Sukarami" /db_xref="taxon:103775" /chromosome="3L" /map="unlocalized" /sex="male" /tissue_type="Thorax" gene 1..2579 /gene="LOC128259818" /note="protein argonaute-2-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 161 Proteins" /db_xref="GeneID:128259818" CDS 167..2527 /gene="LOC128259818" /codon_start=1 /product="protein argonaute-2-like isoform X2" /protein_id="XP_052848376.1" /db_xref="GeneID:128259818" /translation="
MTKMPAKAYHYDVKIMPERPKKFYRQAFDQFRTNQLGGAIAAFDGRASCYSVDKLKTNSKDPEVTVIDKQGRTLHYTVEIKETGDLEVDLNSLKSYMTTRIFDKPMRAMQCLEVVMSAPCHQKAVRSGRSFFKTSNPGERKELDGGYEALVGLYQSLVLGDRPFLNVDISHKSFPIAMPVIEYLERFVLKEKINSSKSLEKCGHIAESFLKGLDVIYTPPKAFASASRVYKVNGLSHKPGSSQEFALDGKMTTVAEYFKSRNYRLQFPRLPCLHVGSLTNQIYLPIELCQIEGGQALNRKDDATQVANMIKFAATSTNVRKGKIMHLMKYFEHNNDPSISRFGIKIAADFIMVSTRTLNPPQVEYHGKTFCQARNGSWSMGNMQFLETKPKAHKWAILYFNTGMALYNKVSVFEKLVLAQSESMNIKLEARASIEGYKNKLELDNWFGVLKSKNCDLAFVIFPNAENTYDYIKQRTELHHGLLTQCIKQTTFDQRLTSQTIANILLKVNSKLNGINHKLQDNPLLKSLKNAMYLGADVTHPSPDQREIPSVVGVAASHDPYGASYNMQYRLQRSALEEIKDMESITMEHLRVYRQYRKTYPEHILYYRDGVSDGQFPKIKDEELRGINAACAKLGIKPKICCLIVVKRHHTRFFPSGEPSQYNKFNNVDPGTVVDRTIVHPNEMQFFMVSHQSIQGTAKPTRYNVIENTGHLDIDLLQQLTYNLCHMFPRCNRSVSYPAPAYLAHLVAARGRVYLTGTTRFLDLKREYETRQIVPAFMKTNPMYFV"
misc_feature 296..514
/gene="LOC128259818"
/note="N-terminal domain of argonaute; Region: ArgoN;
pfam16486"
/db_xref="CDD:465134"
misc_feature 545..688
/gene="LOC128259818"
/note="Argonaute linker 1 domain; Region: ArgoL1;
pfam08699"
/db_xref="CDD:462567"
misc_feature 695..1039
/gene="LOC128259818"
/note="PAZ domain, argonaute_like subfamily. Argonaute is
part of the RNA-induced silencing complex (RISC), and is
an endonuclease that plays a key role in the RNA
interference pathway. The PAZ domain has been named after
the proteins Piwi,Argonaut, and Zwille; Region:
PAZ_argonaute_like; cd02846"
/db_xref="CDD:239212"
misc_feature order(854..856,899..901,926..928,938..940,989..991,
1010..1012,1016..1018)
/gene="LOC128259818"
/note="nucleic acid-binding interface [nucleotide
binding]; other site"
/db_xref="CDD:239212"
misc_feature 1175..2431
/gene="LOC128259818"
/note="PIWI domain, Argonaute-like subfamily. Argonaute is
the central component of the RNA-induced silencing complex
(RISC) and related complexes. The PIWI domain is the
C-terminal portion of Argonaute and consists of two
subdomains, one of which provides the...; Region:
Piwi_ago-like; cd04657"
/db_xref="CDD:240015"
misc_feature order(1571..1573,1583..1585,1619..1630,1637..1639,
1664..1666,1673..1675,1685..1687,1697..1699)
/gene="LOC128259818"
/note="5' RNA guide strand anchoring site [active]"
/db_xref="CDD:240015"
misc_feature order(1775..1777,1781..1783,1991..1993,2399..2401)
/gene="LOC128259818"
/note="active site"
/db_xref="CDD:240015"
ORIGIN
tcagacaacaagaaacttcagtcttgaacatatcttaaaaggtgtggccaatccatcgacgggttccagggcacgaccacctgcacctgcacctgtaggaatcagcaccaagcgaggaaccatcgggagaagcggcacagctgccgtcaattacctgaatgtggacatgaccaaaatgccggcaaaggcctatcactacgatgtcaagattatgcccgagcggcccaagaagttctacaggcaggcattcgaccagttccgcacaaatcaattgggcggtgcgattgccgcctttgatggcagggcttcctgctactcagtggataagctgaaaacaaattccaaggacccggaagtcactgtgatagataagcaagggcgaactttgcactacacggtggaaatcaaggagactggagacttggaagtggatctaaactctctgaagagctatatgacgacgaggatcttcgacaagccgatgcgggcgatgcagtgtctggaggtggtgatgtcggctccttgccaccaaaaggccgttcggtcaggtcgctcctttttcaagacatccaatcctggcgagcgaaaggaattggacggcggatacgaggctctggtcggtctgtatcagtccttggtacttggtgatcgtcccttcctaaatgtcgacatatcgcacaagtcctttccgattgccatgccggtgatcgaatatctggagagatttgtcctgaaggaaaaaatcaacagcagtaaaagtctggagaagtgcggccatatcgctgaatcgttcctcaaaggcctcgatgtgatttacacaccacccaaagcatttgccagcgcttcgcgggtctacaaagtcaatggactgtcgcataagccgggaagcagccaggaattcgcactggatggcaagatgaccaccgtggcggaatattttaagagccgaaactacaggttgcagtttccccggctaccgtgtctgcatgttggatctctgacgaaccaaatatatttaccgatcgaactttgtcaaatcgagggaggtcaagcattgaatcgcaaggatgacgccactcaggtggccaatatgatcaagtttgcggccacttcgacgaacgtgcgaaagggcaagatcatgcacctgatgaagtacttcgagcacaacaatgatccgtccatcagtcggtttggcattaagatcgccgccgattttataatggtgagcacccgcaccctgaacccaccgcaagtggagtatcacggcaagacgttttgccaggcgaggaacggatcgtggagcatgggcaatatgcagtttctggagaccaagccgaaggcccacaagtgggcgattttgtactttaatacaggcatggcactttacaacaaggtcagcgtattcgagaaattggtgcttgcacaaagcgagtcgatgaacatcaagttggaggccagggcttcaatagaggggtacaagaacaaactcgaactggacaattggttcggggtactgaagagcaagaattgcgatctggcgtttgtgatctttccgaatgctgagaacacctacgactacatcaagcagaggaccgagctgcatcatggcctcctgacgcagtgcatcaagcagaccaccttcgatcaaagactgacctcacagaccattgcaaacatactacttaaggtaaactccaagctgaatggcatcaaccacaagctccaggataatcccctgttgaaatcgctcaagaacgccatgtacttgggtgccgatgtgacccatccgtcgcccgatcagcgcgagattcccagtgtggtgggcgtggcagcctcccacgatccctacggagcctcctacaacatgcagtatcgcctgcagcggtcggctctggaggagatcaaggacatggagtcgataacgatggagcatctgcgtgtgtatcgccagtacagaaagacctatccggagcacatcctctactaccgcgacggggtgagcgacggacagttcccaaagatcaaggacgaggagctgaggggcattaatgcagcctgtgctaagttgggcatcaagcccaagatttgctgcctgattgtggtgaagcgtcaccacactcgcttcttcccgagcggcgagccatcgcagtacaacaagttcaacaacgtggatcccggaaccgtggtcgatcgcaccatcgtgcatcccaacgagatgcagttcttcatggtcagccaccagtccatccagggcacggccaagccgacgcgctacaatgtgattgagaacactggccacctggacatcgacttgctgcaacagttgacctacaacctgtgccacatgttcccccgttgcaatcgctcggtttcatatccggctccggcctacttggcccacttggtggcagcgcgcggacgtgtttacctcactggcaccactaggttcctggacttgaagagggaatacgaaacgcgccagattgtgcccgcattcatgaagacaaaccccatgtactttgtataagcattaattaaggatcacaaatcggaaatagaaatttctccaaaaaaatata
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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