2025-04-03 19:44:13, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_052418003 2781 bp mRNA linear INV 29-NOV-2022 DEFINITION PREDICTED: Dreissena polymorpha cytoplasmic dynein 2 light intermediate chain 1-like (LOC127873897), transcript variant X1, mRNA. ACCESSION XM_052418003 VERSION XM_052418003.1 DBLINK BioProject: PRJNA903932 KEYWORDS RefSeq. SOURCE Dreissena polymorpha ORGANISM Dreissena polymorpha Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Heteroconchia; Euheterodonta; Imparidentia; Neoheterodontei; Myida; Dreissenoidea; Dreissenidae; Dreissena. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_068357) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Dreissena polymorpha Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2781 /organism="Dreissena polymorpha" /mol_type="mRNA" /isolate="Duluth1" /db_xref="taxon:45954" /chromosome="3" /sex="male" /tissue_type="Whole animal" /dev_stage="adult" /geo_loc_name="USA: Lake Superior, Duluth, MN" /lat_lon="46.78671 N 92.09114 W" /collection_date="2017-06" gene 1..2781 /gene="LOC127873897" /note="cytoplasmic dynein 2 light intermediate chain 1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:127873897" CDS 33..1181 /gene="LOC127873897" /codon_start=1 /product="cytoplasmic dynein 2 light intermediate chain 1-like" /protein_id="XP_052273963.1" /db_xref="GeneID:127873897" /translation="
MKAFCFVDASYKSDQIVNIPISCHQQIQYFPSRMTTLWDLALDKAAKTQDEGNTAEENSLFIIGAKNAGKTSIILRFLDRNEAPKPTVALEYTYARRSKGHNMAKDIGHIWELGGGTWLSKLMDVPLNPDTIDHAAVIICVDLSKPDEIWFTLESLLQSCRTRIDTAITEMKQSHPNIRDILQRRAADSFGVDHEDKNMVDLFPVPLIIVGTKYDLFQDMDSEKRKVICKTLRFIAHSNGATLQFFSIKIEQLVQKVRAVMTNQLFGTTPSKAIQIEYNKPLMVPAGLDSLQAIGPPPLSDKDIGRVNAKKPIDLWKHCFTSYFPQTNTDNPARVEDPSKDPKYAEPAIDTLRVQKDEELERYRRQSERRAQKKTRYDEIRA"
misc_feature 141..>917 /gene="LOC127873897" /note="Dynein light intermediate chain (DLIC); Region: DLIC; pfam05783" /db_xref="CDD:368612" polyA_site 2781 /gene="LOC127873897" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ctaccctactgttttgtaaccgtcggtctccaatgaaagctttttgttttgtagatgcgtcttataagtcagatcaaattgtaaacattcctataagttgtcaccaacagattcaatattttccatcaagaatgacaactctctgggatcttgctttagacaaggcagcaaaaactcaagatgaaggaaatacagcagaagaaaactctttatttattattggagcaaaaaacgctggtaaaacatcgattatcctgaggtttctggacaggaatgaggctccaaagccaaccgttgcattggagtatacgtatgctagacgatcaaagggtcataatatggctaaagatataggtcacatttgggagctaggagggggcacctggctgtccaagctgatggacgttccattgaacccagacaccattgaccatgcagcagttattatatgcgtagacctctctaaaccagatgagatctggttcacacttgagtcgcttcttcaatcctgtcgcactcgtattgacactgccatcactgaaatgaagcaaagccatccaaacattcgagatattttgcagcgtcgcgcggcagacagttttggggttgaccatgaggacaagaacatggtggatttgtttcctgtgcccctgattattgttgggacaaaatatgacctatttcaggatatggactctgagaagaggaaggtgatctgtaagactctacggttcattgcacactccaatggagccacacttcagttcttcagtatcaaaatagagcagcttgttcaaaaggtacgagcagtgatgaccaaccagctatttgggaccacaccaagcaaagctattcaaatagaatacaacaaaccgttgatggtgccagcaggccttgactcattgcaagcaattggacctccgccattatcagataaagacattggcagagtcaatgcaaagaaaccgatagacctttggaagcactgctttaccagctattttccacagacgaacactgacaaccctgctagagtggaggaccccagtaaggatcccaagtatgcagagcctgcaatcgacacattgagagtccagaaagatgaggagttagaaaggtatcgtcgacagtctgaaagaagagcacagaagaaaacgagatatgatgaaattcgggcttgaaattctcacaaaggcgatcatgaagagaccattccgtccagtgacagctagacataacaactgacctatttatcaagatttttccttttccagcatattaaaaggaattaatgcgtactttgtagtgtcattcttaaggacagatcaagacgtggattatgtgcatacttttcattaatttacaaatagatgtattctttcctttttaaggtgtattaataacagttccattcggaaaatgtagcttgtgttgtgtgtgtttttcagagctactaacctttaaatcaagttcacgtaaaaaaaatggtatcgctgttctatgttataatcagaactccaagataaatcttgttttatgagctgacatctgcattgtcctgtgatcaatgtatttattataattgtatactattattatgcctttcgaagaaaagggggcatatagtgatcagactgtccgtctgtctgtccgtctttccatcacactttgcgtttaggtttcgaaaaatgctcataacttctatgtcccttgagatataaccttcatatttggtatgcatctgtatatggacaaggcctttccatacgcacaattttttttacccctatgaccttgaccttgaacttagggtccacgtttaggtttcgaaatctgcgtttaggtttcaaaaaattctcataacttctatgtccctggagatgtaaccttcatatttggtatgcatgtgtatatggacaaggcctttcaatacgcacacaaatatttacccctgtgaccttgaccttgaacttagggtccgcgtttaggtttcgaaatctgcgtttaggtttcgaaaaatgctcataacttctgtctcttgagatataaccttcatatttggtatgcatgtgtatattgaccatgccttttcatacacctaaaacattttaaccctgtgaccttgaccttgaacttagggtccgcgttttggtttcgaaatctgcgtttaggtttcaaaaaatgctaataacttctatgtcccttgagatataaccttcatatttggtatgcatgtgtataaggacaaggcctttccatacgcacacaaattttgacccctgtgaccttgaccttgaacttagggtcagcgtttaggtttcaaaatctgcgtttaagtttcgaaaaatgctaataactgctatgtcccttgagatataaccttcatatttggtatgcatgtgtatatggattaggcctttccatatgcacacaaattttgacccctgtgaccttgacgttgaagatagggtccgcgtttaggtttcgaaatctgcgtttaggttttgaaaagtgctcataacttctatgtcccttcagatataaccttcatatgtggtatgcatgtgtatatggacaaggcctttcaatacgcacacaaattttgacccctgtgaccttgaccttgaacatagggtccgcgattaggtttcgaaatctgcgtttaggtttcgaaaaaagctcataacttctatcaagcgtttatagggggcataagtcatcctatatggtgacagctcttgttttttatctattaaacaataaaatatgcgtataaatgtc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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