2025-04-03 19:48:20, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_052408330 3489 bp mRNA linear INV 29-NOV-2022 DEFINITION PREDICTED: Dreissena polymorpha myoglobin-like (LOC127867275), transcript variant X5, mRNA. ACCESSION XM_052408330 VERSION XM_052408330.1 DBLINK BioProject: PRJNA903932 KEYWORDS RefSeq. SOURCE Dreissena polymorpha ORGANISM Dreissena polymorpha Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Heteroconchia; Euheterodonta; Imparidentia; Neoheterodontei; Myida; Dreissenoidea; Dreissenidae; Dreissena. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_068356) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Dreissena polymorpha Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3489 /organism="Dreissena polymorpha" /mol_type="mRNA" /isolate="Duluth1" /db_xref="taxon:45954" /chromosome="2" /sex="male" /tissue_type="Whole animal" /dev_stage="adult" /geo_loc_name="USA: Lake Superior, Duluth, MN" /lat_lon="46.78671 N 92.09114 W" /collection_date="2017-06" gene 1..3489 /gene="LOC127867275" /note="myoglobin-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:127867275" CDS 210..1271 /gene="LOC127867275" /codon_start=1 /product="myoglobin-like isoform X4" /protein_id="XP_052264290.1" /db_xref="GeneID:127867275" /translation="
MAELVQQKTLRGAVDKMALFDHHRLQGYRELRLAHLQLSIIASGYIWQEGDSGAAKVLPACLAVPWHGVSMLLGIQPVLCHPSLVLANWTVDDQGVLQSLYNLPGGDHAEWFVTVTAQVELAFAKGLKALMQALTHAQNRNVDALVIDLQNIKHTVQEMKKAFSKMHEKLSAETFYDVLRPFLSGWGGDGSPLPDGVVYTGISDEPLQMTGGSAAQSSTLQCIDAVLRVRHGPEIRSFLENMRNYMPPAHKEFIETIEEHSQVKLAVAESHDQQLTAAYNECLESVVDFRSYHVQIVTKYIVLMANRETRNKDYEALATRGTGGSSILPFLKSLRSTTSETRINDNKYSEHKS"
misc_feature 216..1232 /gene="LOC127867275" /note="Indoleamine 2,3-dioxygenase; Region: IDO; cl21721" /db_xref="CDD:473941" polyA_site 3489 /gene="LOC127867275" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
attgtcagaaactggacaaaaattacgattaatttatattttatttataaatattcgaattgataaaaatgttgttacagctctgacgtgttcttatgtgtactctaagactaaagcaggtctacacaatatgtattggaccacgagcctgcagttcatgaaaagttctaccagattatttcagtgaatggaatacactggctcaaaacatggcagagctagtacaacagaaaactctgaggggtgcagttgacaagatggccttgtttgaccatcatagactccaagggtaccgtgaactcaggttggctcacctccagctgtccatcattgcctcgggttatatctggcaggaaggggatagtggggcagcaaaggtgctgccagcctgtctagcggttccctggcacggggtgtccatgttactggggatacagccagtgttgtgtcacccaagtcttgtgctcgccaactggactgtggatgatcaaggtgtgctacaaagtctctacaatctgccgggtggtgatcatgcagagtggtttgtaaccgtcacagcacaagttgagttggcttttgcgaagggtttgaaggccctgatgcaagcgcttacacatgctcaaaatagaaatgttgatgccctggtaattgatttgcaaaacatcaaacacactgttcaggaaatgaaaaaggcattcagcaaaatgcatgaaaagctgtcagctgagaccttttacgatgtgctgcggccatttctaagtggctggggcggagatgggtccccactccctgacggtgttgtgtacactgggattagtgatgaaccattacagatgacaggtggaagtgcagctcaaagctccaccctacagtgcattgatgctgttctgagggtcagacatggtcctgaaattcgcagtttcttagagaacatgaggaactatatgccacctgctcataaagagttcatagaaacaatagaggagcattcccaggtcaaactagcagttgccgagagtcatgatcaacaactgacagcagcgtacaacgagtgtctggagtctgttgttgacttcaggagttaccatgtgcagattgtaaccaaatacattgtgctaatggcgaacagggaaacgaggaacaaagactatgaggcactggctacgcgcggaactggcggatcaagtatattaccattcctgaagagcctgcgtagtactacatctgaaacccgcataaacgacaataaatattctgaacacaagagctgagaacgccgcttgatgtatgtgtctcattaaaaccagttcaatcgacaatacttaaagtaatgaatattaactataattgttttgactgtattgtttttgacagctgttcttcagggatatttgacataccgatatttaaaatgtgcaggttttatagtatataaatagtatttacatgacaatctacttaacaaaatatctctgttgaactgaagaccaagaaatcgtcgaagttgtgattatgtatttacctgtaaatgcaaatttataatttgattcggttgtcggaaagttacttttaagattttatatcatgtattattggtgtacatttaatagcaattttgtgataatattttgttacagttttacatgataatatatgacttttgacttatacattgctctgtagatattttaaacatttaaatatccttacactatggaatgtgatgatgttattttgttaacttttttttcagattttttttttcgtttacagcacaaagtacagtgaagcatgaccatacctatgtaattataccaaaatttttgtttctgctgtttttgtgtcgcctgactatggtcaggggacctataggtattacttttttggcgtcacactttttgaaaaaggctctaacttctgtgtcccttcagatattgcttttatatttggtatgcatgtgtatctggacgacacctttccatgcgcatacaatattttaccactgtgaccttgaccttgagcttgaggtcaatgttcaggtttcgaaatctgcgaccgcgattcgaaaaaggctcagaactactgtgtcccttcaaggctctaacttctgtgtcccttcagatattgctttcatatttggtatgcatgtgtatctggacaacacctttcaatgcgcatacaatattctacccctgtgaccttgaccttgaacttgaggtcaatgttcaggttttgaaatctgcgattgcgattcgaaaaaggctcttaactactgtgtcccttcagatattgcttttatatttgatatgcatgtgtatcaggacaacaccattccatgcgcatacaattttttacacctgtgaccttgaccttgaacttcaagtcagcattcaggttgcaaaatctgcgaccgcgacttgaaaaaggctcacaactactgtgtcccttcaaatattgctttcatacttagtatgcatgtgtatctggacaacaccattccatgcgcatacaatattttaccccttgaccttgaacttgaggtcagcattcaggtgtcaaaatctgcaaccgagattcgaaaaaggctcataacttctgtgtcctttcagatattgctttcatatttggtatgcatgtgtgtctggacaatagctttccatgcgcatacgatattctacccctgtgaccttgaccttgaacttgaggtcaatgttcaggttttgaaatatgcgaccgcgattcgaaaaaggctcataactactgtgtccctttagatattgctttcatatttggtatgcatgtgtatctggacaacacctttccatgtgcatacaattttttacccctgtgaccttgacattgaaatttaggtcagcgttcaggtttcaaattctgtgaccgcgatttgaaaaaggctcttaacttctgtgtcccttcagatattgctttcatatttggtacgcatgtgtatctggacaagacctttccatgcgcataaaagttttgacacctgtgaccttgaccttgaacttagggtccgcgtttagatttcgaaatctgcgaccgtgaccaaaaaaaggttcataactactatatcttgagctttactttaaacatttttaaccaggtttttcgaaggaaaaaactgattattagatttgcaaatgtcggcgggcgggctggcgggcggaacaagcttgtccgagccataactttgtcgttcattgtgagattttaaaatcatttggcacatttgttcaccatcattagacggtgtgtcacgcaaaagaattacgtcaatatctccaaggtcaaggtcgccaagactaaacgtagatttattttgaaacaaggggggtaactatgaacaatcagttcaggttgagttgtttccctttatcagactttttttcaatttgaaaacctggttttgtgacaattttgtcccttgttaataataataataataaacgatttgatatttgtgaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]