2025-04-03 19:41:12, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_051900514 3872 bp mRNA linear VRT 26-FEB-2023 DEFINITION PREDICTED: Ctenopharyngodon idella uncharacterized si:cabz01007794.1 (si:cabz01007794.1), transcript variant X2, mRNA. ACCESSION XM_051900514 VERSION XM_051900514.1 DBLINK BioProject: PRJNA893619 KEYWORDS RefSeq. SOURCE Ctenopharyngodon idella (grass carp) ORGANISM Ctenopharyngodon idella Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Ctenopharyngodon. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_067226) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_019924925.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/25/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3872 /organism="Ctenopharyngodon idella" /mol_type="mRNA" /isolate="HZGC_01" /db_xref="taxon:7959" /chromosome="7" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..3872 /gene="si:cabz01007794.1" /note="uncharacterized si:cabz01007794.1; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:127516151" CDS 1..3342 /gene="si:cabz01007794.1" /codon_start=1 /product="uncharacterized protein si:cabz01007794.1 isoform X2" /protein_id="XP_051756474.1" /db_xref="GeneID:127516151" /translation="
MGSKWIYVAILGMACLMLAVNGTDGSNSTASNSSISSNMTMNLTQTSPPNITTNLTMTQPPDINMNLTHTSPPNITTNLTMTQPPDINMNLTQTSPPNITTNLTMTPPPNMTLNLTHTSPPNITTNLTMTHPPDINMNLTHTSPPNITTNLTMTLPPNMTLNLTQTSPPNITTNLTMTQPPDINMNLTHTSPPNNTTNMTMTPPPNMTLNLTQTSPPNITTNLTMTHPPDINMNLTQTSPPNITTNLTMTPPPNMTLNLIQTSPPNITTNLTMTHPPDINMNLTHTSPPNNTTNMTMTPPPNMTLNLTQTSPPNITTNLTMTHPPDINMNLTQTSPPNITTNLTMTLPPNMTVNLTHTSPPNITTNLTMTHPPDITMNLTQTSPPNITTNMTMTLPPNMTLNLTQTSPPNITTNLTMTHPPDINMNLTHTNPPNITTNLTMTLPPNMTMNLTHTSPPNITTNLTMTHHPNMTMNLTHTSPPNITTNMTMTLPPNMTMNLTHTSPPNITTNMTMTLPPNMTMNLTHTSPPNITTNMTMTLPPNMTMNLTHTSPPNITTNMTMTLPPNMTMNLTHTSPPNITTNMTMTLPPNMTMNLTHTSPPNITTNMTMTLPPNMTMNLTHTSPPNITTNMTMTLPPNMTLNLTHTSPPNITTNLTQTRPPSMTNNITLPGSNIITNISNQSLEITGRDNCRRDRACFSAPPTCNPGAQGSCYFLSTKGITGNADNFTFELSGESDGYIAAGLSRDSSGQGATIYSCANFNGTMRFIRATLNNQRLTQDDTFIPGSFRGSVNGKKIQCIFNAAGLGSSTARAETTEPFIFVLTGSVSNGSLDSPVTRLATNGSVDLSNPNSTDVLVITPSTNATASNATTASNATSSNITANTSTTIDKVTRDSCKKDKACFSTPASCDPSTSNSCFFASTRGVNGSSDNLTFELSGESNGYIAVGLSRDNKEGDGDTIYSCANNNGTVKFIRATLNNTILTPDNTFRPGSFRSSVNNTKIQCIFIAAGLNSSTRAANTNAFLFFFTGNFTNGTMGSPFTRMATNSSVDLTNFNSSDVAIITPPTNTVSNTTTSTTITTTTAKPTTGGSNALQHVASQAAVVILSGILAVLLL"
misc_feature <274..1623 /gene="si:cabz01007794.1" /note="Herpes virus major outer envelope glycoprotein (BLLF1); Region: Herpes_BLLF1; pfam05109" /db_xref="CDD:282904" misc_feature 2065..>2403 /gene="si:cabz01007794.1" /note="Domon-like ligand-binding domains; Region: DOMON_like; cl14783" /db_xref="CDD:472705" misc_feature 2665..>3015 /gene="si:cabz01007794.1" /note="Domon-like ligand-binding domains; Region: DOMON_like; cl14783" /db_xref="CDD:472705" polyA_site 3872 /gene="si:cabz01007794.1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
atggggagtaaatggatctatgtggctatcctggggatggcatgcttgatgcttgcagtcaatggaacagatggtagcaactccacggcaagcaacagctcaatatcttctaacatgaccatgaacctgacccaaacaagccctcccaacattaccactaacctgaccatgacccaacctccagacataaacatgaacctgacccacacaagccctcccaacattaccactaacctgaccatgacccaacctccagacataaacatgaacctgacccaaacaagccctcccaacatcaccactaacctgaccatgaccccccctcccaacatgaccttgaacctgacccacacaagccctcccaacattaccactaacctgaccatgacccaccctccagacataaacatgaacctgacccacacaagccctcccaacatcaccaccaacctgaccatgacccttcctcccaacatgaccttaaacctgacccaaacaagccctcccaacattaccactaacctgaccatgacccagcctccagacataaacatgaacctgacccacacaagccctcccaacaacaccactaacatgaccatgaccccccctcccaacatgaccttgaacctgacccaaacaagccctcccaacattaccactaacctgaccatgacccaccctccagacataaacatgaacctgacccaaacaagccctcccaacatcaccactaacctgaccatgaccccccctcccaacatgaccttgaacctgatccaaacaagccctcccaacattaccactaacctgaccatgacccaccctccagacataaacatgaacctgacccacacaagccctcccaacaacaccactaacatgaccatgaccccccctcccaacatgaccttgaacctgacccaaacaagccctcccaatatcaccactaacctgaccatgacccaccctccagacataaacatgaacctgacccaaacaagccctcccaacatcaccactaacctgaccatgacccttcctcccaatatgaccgtgaacctgacccacacaagtcctcccaacatcaccaccaacctgaccatgacccaccctccagacataaccatgaacctgacccaaaccagccctcccaacatcaccactaacatgaccatgaccctccctcctaacatgaccttgaacctgacccaaacaagccctcccaacattaccactaacctgaccatgacccaccctccagacataaacatgaacctgacccacacaaatcctcccaacatcaccaccaacctgacaatgacccttcctcccaatatgaccatgaacctgacccacacaagccctcccaacatcaccaccaacctgacaatgacccatcaccccaacatgaccatgaacctgacccacacaagccctcccaacatcaccactaacatgaccatgacccttccccccaacatgaccatgaacctgacccacacaagccctcccaacatcaccactaacatgaccatgacccttccccccaacatgaccatgaacctgacccacacaagccctcccaacatcaccactaacatgaccatgacccttcctcccaacatgaccatgaacctgacccacacaagccctcccaacatcaccactaacatgaccatgacccttccccccaacatgaccatgaacctgacccacacaagccctcccaacatcaccactaacatgaccatgacccttcctcccaacatgaccatgaacctgacccacacaagccctcccaacatcaccactaacatgaccatgacccttcctcccaacatgaccatgaacctgacccacacaagccctcccaacatcaccactaacatgaccatgacccttcctcccaacatgaccttgaacctgacccacacaagccctcccaacatcaccaccaacctaacccaaactcgtcctcccagcatgacaaacaatataacattaccaggctccaatatcataaccaacatcagtaatcaatcactagaaattactggcagagataactgcagaagggatagggcttgtttctccgctccacctacctgtaatccaggtgcacaaggttcctgctatttcctctctactaaaggaataaccggaaatgcagataattttacctttgagctcagtggcgagtcagatggttacatcgcagctggcctatctcgagacagcagtggtcaaggtgccaccatctattcttgcgccaattttaatggtacaatgaggttcatccgtgccacactgaacaatcaaagactgactcaggatgacacattcatccctggaagcttccgtggctcagtgaatggaaaaaagattcaatgcattttcaatgctgcaggtctcggcagcagcaccgctcgtgctgaaaccacagaacctttcatcttcgttttaacaggcagcgtctcaaatggctctctggattctccagtcactagactggccacaaatgggtcagtggacttaagcaaccctaacagcacagatgttttggtcataacacccagtacaaacgccactgcatctaacgccactacagcatcaaacgccacttcatctaacattacagcaaacactagtactacaattgataaggtcaccagggacagctgtaagaaggacaaggcatgtttctccactccagccagctgtgatccatctacttccaatagctgtttttttgcttccacaagaggggtaaatggaagctcagacaatctcacttttgagctcagtggggagtcgaatggttatatcgcagttggcctctctcgagacaacaaggagggtgatggtgataccatctattcatgtgccaacaacaatggtacagtgaagttcatccgtgccacactgaacaacaccattctgactccagataacacctttagacctggatccttccgtagctctgtgaacaacacgaagattcaatgcatattcatagctgcaggtctcaacagcagcacccgtgcagcgaacacaaatgcttttctcttcttcttcactggcaactttaccaatggcaccatggggtctccatttacacgaatggcaacaaattcatcagttgatctaaccaactttaacagctcagatgttgcaataataacaccccctacaaatacagtctctaatactaccacttctactactattacaactactactgcaaaacctactacaggagggagcaatgcgctgcagcatgtggcttctcaggctgctgtggtaattctctcagggatccttgcagtcctcctgttgtaaggatgctgcctggacgtgtcttttgctttctgaaactggtcgatgagcactgaatacttgatgaacccaacactaaagtataagttattcagcacatttataattgtgtaatactgtgactctgggaacaatgaagcaagaagctgaaaatatggggaagagggaaatatatcatttatttaatctgtgtgagagagaaagattgtgtgtatgagtgtgtttttgtgagagttagtgtttgtattctgcaaatgtactgatacttaaaaatcaggctcctgcacagaatgggctgatgagaatgtgtataatcagtctgttaatgtaatggcgcaagtcaccaagtggctgaaatgtctagaaatagctaagaaaattatttttaaatgtctttcatttattatgtaatgaaagtacactgctgccccaaaacattgattgcctgtaagttttaaatgaagtcacttgtttttggaagaaaagaattatgcataataaaaattatttaaatgttcaagtaaacaatgaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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