2025-04-03 19:44:12, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_051231372 1613 bp mRNA linear INV 01-MAR-2023 DEFINITION Trichomonas vaginalis G3 A-type inclusion protein-related family (TVAGG3_0358090), partial mRNA. ACCESSION XM_051231372 VERSION XM_051231372.1 DBLINK BioProject: PRJNA938429 BioSample: SAMN31107788 KEYWORDS RefSeq. SOURCE Trichomonas vaginalis G3 ORGANISM Trichomonas vaginalis G3 Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas. REFERENCE 1 (bases 1 to 1613) AUTHORS Sullivan,S.A., Carlton,J.M. and Schatz,M.C. TITLE A new chromosome-level assembly of the sexually transmitted parasite Trichomonas vaginalis JOURNAL Unpublished REFERENCE 2 (bases 1 to 1613) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-FEB-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1613) AUTHORS Sullivan,S.A., Carlton,J.M. and Schatz,M.C. TITLE Direct Submission JOURNAL Submitted (15-FEB-2022) Center for Genomics & Systems Biology, New York University, 12 Waverly Place, New York, NY 10003, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_067207). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1613 /organism="Trichomonas vaginalis G3" /mol_type="mRNA" /strain="G3" /isolation_source="clinical isolate" /host="Homo sapiens" /culture_collection="ATCC:PRA-98" /db_xref="taxon:412133" /chromosome="V" /geo_loc_name="United Kingdom: Beckenham" /collection_date="1973" gene <1..>1613 /locus_tag="TVAGG3_0358090" /old_locus_tag="TVAG_2v0358090" /note="replaces TrichDB:TVAG_193740" /db_xref="GeneID:75651304" CDS <1..>1613 /locus_tag="TVAGG3_0358090" /old_locus_tag="TVAG_2v0358090" /note="eggNOG seed ortholog:5722.XP_001315526.1;replaces TrichDB:TVAG_193740" /codon_start=1 /product="A-type inclusion protein-related family" /protein_id="XP_051101102.1" /db_xref="GeneID:75651304" /translation="
EIKNINSHINEKNSKNSETDKKNKDLEQELNDKKAQLESIPTVEDKSSELENEIKNINSHINDKNSKNSETDHKNKDLEQELNDKKSQLESIPTVEDKSSELENEIKNINSHINEKNSKNSETDKKNKDLEQELNDKKAQLESIPTVEDKSSELENEIKNINSHINEKNSKNSETDKKNKDLEQELNDKKSQLESIPTVGDKSSELENEIKNINSQINEKNSKNSETDHKNKDLEQELNDKKQELESIPTVEDKSSELENEINNVDSQINDKNSKNSETDHKNKDLEQELNDKKSQLESIPTVEDKSSELENEIKNINSHINEKNSKNSETDKKNKDLEQELNDKKAQLESIPTVEDKSSELENELKKIDSQINDKNSKNSETDHKNKDLEQELNDKKSQLESIPTVEDKSSELENEINNVDSQINEKNSKNEETDHKNKELEQQLSDKKAQLESIPTVEDKSSDLENELKSVEQSINEKNANNDKTDRHNKELEHQLEEEKNNMEELINQKNSMNEDTDKKNKELEEQLESKKKEL"
misc_feature 1..>1613 /locus_tag="TVAGG3_0358090" /old_locus_tag="TVAG_2v0358090" /note="helix-rich Mycoplasma protein; Region: Mplasa_alph_rch; TIGR04523" /db_xref="CDD:275316" ORIGIN
gaaatcaagaacatcaattcacatatcaacgaaaagaattcaaagaactcagaaactgacaagaagaacaaagatcttgaacaagagttgaatgataagaaagctcaacttgaatccattccaaccgttgaagacaaatcatccgaactcgaaaacgaaatcaagaacatcaattcacatatcaatgacaagaattcaaagaactcagaaaccgatcataagaacaaggaccttgaacaagagttgaatgataagaagtctcaacttgaatccattccaaccgttgaagacaaatcatccgaactcgaaaacgaaatcaagaacatcaattcacatatcaacgaaaagaattcaaagaactcagaaactgacaagaagaacaaagatcttgaacaagagttgaatgataagaaagctcaacttgaatctattccaaccgttgaagacaaatcatccgaactcgaaaacgaaatcaagaacatcaattcacatatcaacgaaaagaattcaaagaactcagaaactgacaagaagaacaaagatcttgaacaagagttgaatgataagaagtctcaacttgaatctattccaacagttggagacaagtcatccgaactcgaaaatgaaatcaagaacatcaattctcagatcaacgaaaagaattcaaagaactcagaaaccgatcataagaacaaggaccttgaacaagagttgaatgataagaaacaagaacttgaatccattccaacagtagaagacaagtcatccgaacttgaaaatgaaatcaataatgttgattctcagatcaatgacaagaattcaaagaactcagaaaccgatcataagaacaaggaccttgaacaagagttgaatgataagaagtctcaacttgaatccattccaaccgttgaagacaaatcatccgaactcgaaaacgaaatcaagaacatcaattcacatatcaacgaaaagaattcaaagaactcagaaactgacaagaagaacaaagatcttgaacaagagttgaatgataagaaagctcaacttgaatccattccaaccgttgaagacaaatcatccgaacttgaaaacgaacttaagaagattgattctcagatcaatgacaagaattcaaagaactcagaaaccgatcataagaacaaggaccttgaacaagagttgaatgataagaagtctcaacttgaatccattccaaccgttgaagacaaatcatccgaacttgaaaatgaaatcaataatgttgattctcagatcaacgaaaagaattccaagaatgaagagaccgatcataagaacaaggaactagaacaacaactttccgataagaaggcgcaattagaatcaattccaactgttgaagacaagtcatccgatcttgagaatgaacttaagtctgttgaacaatccatcaacgaaaagaacgcaaataacgataaaacagacagacataacaaggaactcgaacatcaacttgaagaagaaaagaataacatggaagaattaatcaatcaaaagaattctatgaacgaagataccgacaagaagaacaaggaactcgaagaacagctcgaatcgaagaagaaggaacttga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]