2024-05-04 21:52:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_050770740 2129 bp mRNA linear PRI 26-FEB-2023 DEFINITION PREDICTED: Macaca thibetana thibetana retina and anterior neural fold homeobox 2 (RAX2), transcript variant X2, mRNA. ACCESSION XM_050770740 VERSION XM_050770740.1 DBLINK BioProject: PRJNA873043 KEYWORDS RefSeq. SOURCE Macaca thibetana thibetana ORGANISM Macaca thibetana thibetana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_065596) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_024542745.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2129 /organism="Macaca thibetana thibetana" /mol_type="mRNA" /isolate="TM-01" /sub_species="thibetana" /db_xref="taxon:257877" /chromosome="19" /sex="male" /tissue_type="peripheral blood" gene 1..2129 /gene="RAX2" /note="retina and anterior neural fold homeobox 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 6 Proteins" /db_xref="GeneID:126942768" CDS 76..630 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X2" /protein_id="XP_050626697.1" /db_xref="GeneID:126942768" /translation="
MFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(157..171,175..177,226..228,244..246,283..285, 289..294,301..306,310..318,322..327) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(163..165,172..174,292..294,301..306,313..315) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 166..324 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" polyA_site 2129 /gene="RAX2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
agacgcggcgccgggcccgctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggtgggagccatgttcctgagcccgggcgagggcccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctcccactacccggatgtctacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagccccgagacttcctgaggccccggcgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcatccttcgggcctcatgcctttgctcctaccttcgcagacggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggacagggcttggccgccagcctgagcctgctgccctcctgggccccctcctcggttcagcctgagagctggagacgtgccctggtgacagccaccacgccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccatcactggcgagcgggaccagagacaggctgctgggtcccccgcccccatcctgtcccccacccgatcaccacccgtcctgctggcagcggaccggccccagtgtcaggcaggaggtgacccaagtattcctaggccagggacggggaccctcctcccctcctggggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctgtgaagctgagtggcggggccgctgactctgtaagatgagtgtacatctctctgctgctcccactccccatcagcagagctgcccgctctccaggctcccggtccccccgaaatgacagtaacggcagctcccgcgagcctgctctcctttcacggtgcacccaccacgtgagcgctcccctctccgttgcgccctggacctcgggcacagccgtcagcccattctacagagagggaaactggggctcaggcaggaagccaggtccccaagattgcacggctaggagtgggtgaagctgcctttcagacccatcaccggcccccccatccgaggcacggcagcaggttctggagggagggtgtggtctcgtgtggaggcgggctggtgctggctgtgtcgtcatcagcccctgttccttgcgtccccacagaccccaggccccgtgcatgtcctccagccctgcggaggcacggctggcgtctgctctgtccaacccagttgcattgcccaagagctctgaggaaggaggctgtcgcggggctgagaacccgctgtgactggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggacagtcttggccagggccaccccctgagacagaagtgcggcaccagggcaggagctgcagtagctaccctcctcgtctccagcccgggctccccagatcactcccagatcaccggggcaccccatctccaggcggcacctcacacactagtcttgtggcccaacgcccagccaatgtcactgtgcaccaggcactggggacacggcagtaagcacaagaaagattttttttttctttttaacctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggacgctgaggtgggaggattgcttgagaccagtctgggtgacatagcaagactcagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacacttgtcatcccagggacccgagaagctgaggcaggaggattgcttgagcccagaaggtcgaggctgagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaaaacaaacctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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