2025-04-04 04:36:08, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_048395783 2676 bp mRNA linear INV 26-MAY-2022 DEFINITION PREDICTED: Haliotis rufescens proline-rich extensin-like protein EPR1 (LOC125379630), mRNA. ACCESSION XM_048395783 VERSION XM_048395783.1 DBLINK BioProject: PRJNA839416 KEYWORDS RefSeq; includes ab initio. SOURCE Haliotis rufescens (red abalone) ORGANISM Haliotis rufescens Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025963829) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Haliotis rufescens Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2676 /organism="Haliotis rufescens" /mol_type="mRNA" /isolate="VD_foot" /db_xref="taxon:6454" /chromosome="Unknown" /tissue_type="foot muscle" /dev_stage="adult" /geo_loc_name="USA: Van Damme State Park, CA" /lat_lon="39.269 N 123.798 W" /collection_date="2020-02-07" /collected_by="Blythe Marshman" gene 1..2676 /gene="LOC125379630" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:125379630" CDS 1..2676 /gene="LOC125379630" /codon_start=1 /product="proline-rich extensin-like protein EPR1" /protein_id="XP_048251740.1" /db_xref="GeneID:125379630" /translation="
MATPTIPPPHLSRTVIMAPPTIPPPHLSKTVIMATPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPIIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPIIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPPIPPPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPSPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPSPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPYFSRTVIMAPPTIPPPHLSRTVIMATPTIPPPNLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPSPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPSHLSRTVIMATPTIPPLHLSRTVIMAPPTIPPPHLSRTVIMATPTIPSPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPTIPPPNLSRTVIMATPTIPPPHLSRTAIMAPPTIPPPHLSRTVIMGTPTIPSPHLSRTVIMAPPTIPPTHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPTVPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPPIPPPHLSRTVIMAPPTIPSPHLSRTVIMATPTIPPPHLSRTVIMAPPTVPPPHLSRTVIMAPPTIPPPHLSAQSSWHHLPFHHLTCQNSHHGNTPHSTTSLV"
misc_feature <4..1284 /gene="LOC125379630" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature <667..2283 /gene="LOC125379630" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" ORIGIN
atggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctaaaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctatcattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctatcattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctcccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccatcacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcattatggcaacacctaccattccatcacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccaccttacttttctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctaacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccatcacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccatctcacctgtctagaacagtcatcatggcaacacctaccattccaccacttcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccatcacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctaacttgtctagaacagtcatcatggcaacacctaccattccaccccctcacttgtctagaacagccatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatgggaacacctaccattccatcacctcacttgtctagaacagtcatcatggcaccacctaccattccaccaactcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccgttccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctcccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccatcacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccgttccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcatttgtcagcacagtcatcatggcatcacctaccattccaccacctcacttgtcagaacagtcatcatggcaacacaccccattccaccacctcacttgtctag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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