2025-04-04 04:45:57, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_047148574 879 bp mRNA linear INV 18-MAR-2022 DEFINITION PREDICTED: Schistocerca americana uncharacterized LOC124622781 (LOC124622781), mRNA. ACCESSION XM_047148574 VERSION XM_047148574.1 DBLINK BioProject: PRJNA799013 KEYWORDS RefSeq; includes ab initio. SOURCE Schistocerca americana (American grasshopper) ORGANISM Schistocerca americana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera; Acrididea; Acridomorpha; Acridoidea; Acrididae; Cyrtacanthacridinae; Schistocerca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060125) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Schistocerca americana Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..879 /organism="Schistocerca americana" /mol_type="mRNA" /isolate="TAMUIC-IGC-003095" /isolation_source="physical" /specimen_voucher="TAMUIC-IGC-003095" /db_xref="taxon:7009" /chromosome="7" /sex="female" /tissue_type="Whole body" /dev_stage="adult" /geo_loc_name="USA: Florida, St. Augustine" /collection_date="2021-03-08" /collected_by="Hojun Song" /identified_by="Hojun Song" gene 1..879 /gene="LOC124622781" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:124622781" CDS 1..879 /gene="LOC124622781" /codon_start=1 /product="uncharacterized protein LOC124622781" /protein_id="XP_047004530.1" /db_xref="GeneID:124622781" /translation="
MIMEKTMIMEKTMIMEKTMIMEKTMIMEKTMIMEKTMIMEKTMIMEKAMIMEKAIIMEKAIIMEKAIIMEKAIIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKAVIMEKTVIMEKTVIMEKTVIMEKTVIMEKTVIMEKTVIMEKTVIMEKTVIMEKTIIMEKTIIMEKCRRKKQNNWVQ"
misc_feature 214..>420 /gene="LOC124622781" /note="Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160" /db_xref="CDD:469633" misc_feature 484..>690 /gene="LOC124622781" /note="Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160" /db_xref="CDD:469633" misc_feature 592..>798 /gene="LOC124622781" /note="Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160" /db_xref="CDD:469633" ORIGIN
atgataatggagaagactatgataatggagaagactatgataatggagaagactatgataatggagaagactatgataatggagaagactatgataatggagaagactatgataatggagaagactatgataatggagaaggctatgataatggagaaggctatcataatggagaaggctatcataatggagaaggctatcataatggagaaggctatcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaaggctgtcataatggagaagactgtcataatggagaagactgtcataatggagaagactgtcataatggagaagactgtcataatggagaagactgtcataatggagaagactgtcataatggagaagactgtcataatggagaagactgtcataatggagaagactatcataatggagaagactatcataatggagaagtgtaggagaaagaagcagaataattgggttcagtag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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