2024-03-29 01:45:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_047027798 1875 bp mRNA linear VRT 04-MAR-2022 DEFINITION PREDICTED: Hypomesus transpacificus vimentin like (viml), mRNA. ACCESSION XM_047027798 VERSION XM_047027798.1 DBLINK BioProject: PRJNA810474 KEYWORDS RefSeq. SOURCE Hypomesus transpacificus ORGANISM Hypomesus transpacificus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Stomiati; Osmeriformes; Osmeridae; Hypomesus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_061069) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Hypomesus transpacificus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1875 /organism="Hypomesus transpacificus" /mol_type="mRNA" /isolate="Combined female" /isolation_source="estuarine water [ENVO:01000301]" /db_xref="taxon:137520" /chromosome="10" /sex="female" /country="USA: Fish Conservation and Culture Laboratory, Discovery Bay, California" /lat_lon="37.824580 N 121.595404 W" /collection_date="2019-10-10" gene 1..1875 /gene="viml" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 82 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns" /db_xref="GeneID:124472770" CDS 117..1478 /gene="viml" /codon_start=1 /product="vimentin like" /protein_id="XP_046883754.1" /db_xref="GeneID:124472770" /translation="
MSFRKSTSSYERMFGGAERPSWSGHSSRQFSSPMRSRVSFGLSSAPTIRASKTHRVRSSAPMPRLSSESLDFSLSDAINTEFKTNRTNEKVQMQSLNDRFASYIEKVRFLEQQNKILQAELEQLRGKGTSRIGDLYEEEMRELRRQVDQLTNEKARVDVHRDNLADDIERLREKLQEEIVQREEAEHTMHSFRQDVDNAALARLDLERKVESLQEEINFLKKLHDEELLELQSQMQEQHLQVDVDVAKPDLTAALRDVRLQYENLATKNIQESEDWYKSKFADLTEAAGRNSEALRVAKQEANDYRRQVQALTCEVDSLKGMNESLERQTREMEENFSLETTSCQDTIGRLEEDISNMKNEMARHLREYQDLLNVKMALDIEIATYRKLLEGEEGRISTPLPNFSSMNLRETMVLESKPHVESTSTKRVLIKTIETRDGQVINESTQNHDDLQ"
misc_feature 132..377 /gene="viml" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 378..1304 /gene="viml" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
cgtcccgggacacattcttggtttggggaactccacggacacagcaaggtacagcagcagcaaattccaggagagcattacatcagctaaccgtttaaaagactgcgggatacactatgtcttttcgaaaaagtacttcctcatacgaaagaatgtttggaggagcagagagacctagctggtccggccactcaagccgtcagttctccagcccgatgcgctcccgggtctcctttggtctatcctccgcaccgaccatccgtgcctccaaaactcatagggtccgcagcagtgcaccgatgcctcgtttgtcatctgagagcttagacttctccctgtccgatgcgatcaacaccgaatttaaaaccaaccgcaccaatgaaaaagtgcagatgcaaagtctgaacgaccgttttgccagctacatcgaaaaggtacgttttctggagcagcaaaataagattctccaggcggagttggagcagttgcgtggaaaaggtacgtcccgcattggcgacctttacgaggaagagatgcgggaactcagacgtcaagtcgaccaactcacaaacgaaaaggcccgagtcgatgttcaccgcgacaaccttgcagacgacatcgagcgacttagagagaagttgcaagaagagattgtacagcgggaggaggctgaacacactatgcatagcttcaggcaggatgtggataatgctgctcttgccagactggacctggagcggaaggtggagtcacttcaggaagaaatcaacttcctcaagaagcttcacgatgaagagctgctggagctccagagccagatgcaggagcagcatctgcaggtggacgtggacgtggccaagccggatctgacagcggcactgagagacgtgcgtttgcagtacgagaacctggccaccaagaacatccaggagtccgaggactggtacaagtccaagtttgctgacttgaccgaggcagcgggccgcaacagcgaagccctccgagtggccaagcaggaggccaatgactacagacgccaggtgcaggctcttacctgtgaggtggactcccttaaaggcatgaatgagtcgctggaacgccagacgagggagatggaagagaacttctccttggagaccacaagttgccaggacaccattgggcgtctggaggaagacatcagtaacatgaagaatgagatggcccgccacttgagggagtatcaggacctgctcaatgtcaagatggcgttggacattgagattgccacctacaggaagcttctggaaggagaggagggcaggatttccactccactgccgaacttctcctccatgaacctgagagaaactatggtcctggagtccaaaccccatgtggaaagtacaagcaccaagagagttctgatcaagaccattgaaaccagggatggtcaggtgatcaatgagtctacccagaaccacgatgacttgcagtgatctgcaatgtgtctccactgacaaaagacctgtggcaacatgaagtaaaagcatttcccctcatgtaaaacaaaacctctccaaaatatctgggcaccagatatttatgctgtatgatgaaaagcctgtcaagaagccctccctatatttagacaaaaaagccgaaaaggctttcagctgagacattataatcacgttactttaaagcaaacaccggccagcagctatacagtctttgtatactttctatggtctgtacaaaataatgacatgtaaccaaaactttagcaaatgtttgcaaagcagtaccttgctccctcagtctgcacctgtatgtttaatgaaaagaaaaacattcagatacccttatagcattaataaactattttgaaaagtt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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