2024-03-29 13:53:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046706149 4277 bp mRNA linear INV 14-FEB-2022 DEFINITION PREDICTED: Haliotis rubra divergent protein kinase domain 1B-like (LOC124271079), mRNA. ACCESSION XM_046706149 VERSION XM_046706149.1 DBLINK BioProject: PRJNA801670 KEYWORDS RefSeq; corrected model. SOURCE Haliotis rubra (blacklip abalone) ORGANISM Haliotis rubra Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025765525) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Haliotis rubra Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-104 QXJH01000157.1 1175076-1175179 105-183 QXJH01000157.1 1177289-1177367 184-309 QXJH01000157.1 1178221-1178346 310-414 QXJH01000157.1 1179764-1179868 415-615 QXJH01000157.1 1181787-1181987 616-834 QXJH01000157.1 1182531-1182749 835-835 "N" 1-1 836-4277 QXJH01000157.1 1182750-1186191 FEATURES Location/Qualifiers source 1..4277 /organism="Haliotis rubra" /mol_type="mRNA" /isolate="DU_JTF1" /isolation_source="Aquaculture farm" /db_xref="taxon:36100" /chromosome="Unknown" /tissue_type="muscle" /dev_stage="adult" /country="Australia: Jade Tiger Abalone Farm, Indented Head, Victoria" /collection_date="2017" /collected_by="Adam Miller" gene 1..4277 /gene="LOC124271079" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:124271079" CDS 79..1332 /gene="LOC124271079" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: divergent protein kinase domain 1B-like" /protein_id="XP_046562105.1" /db_xref="GeneID:124271079" /translation="
MFGCPISFRMRRRKRVRALLLSAIDRLISCLEFCQELSQGPWKMCLFVILILGLLYASVWRIFLYDPCNSSLIRKQLCSQYHTGEVSGALCYPMCIQNVQFFSYCEATEDEKSFVWHQTKFRVQMIDESVPWWKLQEGTSISEFRGQVSSFLQQKLGHSIYEDLTDKLLLYADFNEDGKLSLAEAQSLWRLIHIHEFLLLFIFQKSSTFPNINGTCGHFYGFQHAPIPRLYDKQPNSWLSKLFTNSYKWEFPXWAKRARVTLGIVEFSMDIYEEQGTKFLMCNISPLNFGITFDYEAMLTNTKDIASASSIKTLLHNQTCYSDSDCLYSRHCQSRCDRRSGRCSGEIIHPTLWFICDIIRDYLLFDAPKHLYYELKRLLGKCSLLSMKGDNADLKHAVVYHDLKSFLWKEIQYRPDA"
misc_feature 196..588 /gene="LOC124271079" /note="N-term cysteine-rich ER, FAM69; Region: PIP49_N; pfam14875" /db_xref="CDD:434279" misc_feature 640..1227 /gene="LOC124271079" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl21453" /db_xref="CDD:451246" polyA_site 4277 /gene="LOC124271079" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cataatatttgcagacgatggaaataattgatcaaagatgatcgttatttctgcgacagattggtgcattactgacacatgtttggttgtccaatttcattcaggatgcgcagacggaagagagttcgagccttgttactgtctgccattgaccgactcatctcatgtttagaattctgtcaggaactgagtcaaggaccatggaagatgtgtctgtttgttatcctgatattggggctgctgtatgccagtgtgtggaggatcttcttatatgacccctgcaacagctcactcatcagaaaacagctgtgtagccagtatcatacaggcgaggtgtccggtgcactatgttaccccatgtgtatacaaaatgtacagttcttctcctattgtgaggcaacagaggatgagaagagctttgtatggcaccagacgaagttcagggttcagatgattgatgagtctgtgccgtggtggaagttgcaagaaggcacttcgatatccgagttcagaggtcaggtgtcatccttcttacagcagaaacttggacattccatatacgaggacttaacagacaagctcttactgtatgcagactttaatgaagacggaaagctgtctctggcagaagcacagtcactatggagactcatccacatacacgagtttctcttgctcttcatattccaaaagagttccacattccctaacattaatggaacctgcggccatttctatggattccagcatgctcccattcctcgtctgtatgacaagcaaccaaatagctggctcagcaaattattcaccaactcctacaaatgggaatttcccngctgggccaaacgtgctcgagtgaccctcggcattgtggaattcagcatggacatctacgaggaacagggcaccaaattcctcatgtgtaacatttcccctctcaatttcggcatcaccttcgactacgaagccatgctgacgaacacaaaagacattgcttcagcctctagcatcaagacccttctccacaatcaaacatgttactctgattctgattgtctttactccagacattgtcagtcccgatgtgatcggaggagtggaaggtgttcaggggagataattcatcccactttgtggtttatttgtgatatcattagagactatttgttgtttgatgcccccaaacatctgtattatgagttgaagagattgttaggtaaatgctctttgttgtcaatgaaaggagataatgctgatttaaagcatgctgtcgtataccacgatctcaaatcttttctctggaaagaaatacaatatagaccagatgcatagttaaatttagcagtttcttttcacaacagttttaattttagtttatgtaatatgttgtcttttacaacaacaaaatgtctgatagtgatttcagtaaattgtttcaggtttttagaccatgtaaaatatctttgataaaaccatcacttaatacaattggacataattcttccataattttccttttctttctgtgtaaagtttaaagtttgtattaatatcctcagatttggggaacatttatcatgctcggtattgtgggcatatgtttaatagagtgcttcaactctagttaattttagttgataatatcatcagatttggggagatatttagctgttgaataatgctcagtccctgaaaatatgatttaaacaagaaactcccttttaactgaaatttataaaaaaagagacttaatttagggctataataaaaactttatttagtgctatagtgaagactacattttgtgctattgccatgcagacttcatttttgccattgtggagacttcatttagttctatgtggcatttatagtgaagtgaagacttccttagagctatagtgaagacctcatttagggctatcttgaagacttccttagggctgtagtgaagacttccttagggctgtagtgaagacttccttagggctatagtgaagtgaagactcatttagggctatagtgaagacctcatttagggctatagtgaagacctcatttagggctatagtgaagatttccttagggctataatgaagacttccttagggctatagtgaagacctcatttatggaaatagttaagacttccttagagctatagtgaagacctccttagagctattgtgaagatgtcctttagggctattgtgaagcctttatttagggctattgtgaagacttcatttagagctatagtgaagacttcatttagggctatggtattacaatggtgttgatcaaagggaaaactaatatagtttggtgactgtgagacagactatgttgtattgttagatatgtagagaccatacctgttgttataataaagtcaacatatttaaaaatgtacctttaaaacctggttcctccattaacattaagtaccatgactgtaaaatgagatcaaatgttattcacttgtcactttgttttacaccatatggctagtttcattttgaaagagtatttcataattatcagattttatggaatgagctgcaattatgttgttaatgttatgtgctctgtattatttgtataacagtgtgtggtgagactatattctgtgaatattaattcttgccttttctttttttgattagtaagttaaatttagtatgttataaactatattaccacttgtaccaatggttgaatgttatgtaaatgaggtgtatttatatttatttaattacttgttgttgggtttcacctgtcagtttcatctgagcaacttctcggttcacggcctgtaggcatgtggcagatagatcttgtgtcgggctgaagtttctgatttgtattgcaccttatggcctgcagtaaatgtatgccttgattgacatgtttcaataagctgaaggacttgttcaatgggttaagagtttcatcagggtgtgcggcttataaagtctgtaagccctgatggcaacatggcagaatatgttttttaaaacactggaaagtcttgtgttgaccttttcaaccttttcacagttgcattactagaaacagtcatcagggttagatcttaagtcaaagtttatcaagactaataacaataaaataccactttgatgctaaactatgtggaaattgggaagtctgtaccagcccacaggaaattgtactagcctcgggctagtgtaagttataaccctgttaagactttcttgatctgtgaggtacactctaaccggttaaagggaaggtcgttctggtgtgacctgtaatgtcctcgggggcaatgtgaccagtaatgggatgttcacaggtcagtgtgacctataatgggatgtcttcaggtcagtatgacctgtaatgggatgttctcggggcagtgtgacctataatgggatgtcttcaggtcagtgtgacctgtattggcatgtcctcagttcaatgtgtagcagtagcaagaattaagctctgattgtaatgaaattgtatttgaggtagcatgttgttgaagatggaaatccaacttccctgaaaatggcatgagtgcttaactccaaatatcaccaaacaataaatggcgcggcatctgcattcagttagagaaagattttaacttaatattatgaaactgaaagccaatcaatacacagtatcaagtattttaccaggaagatatcccattaatcaggagaattaaacaagagaatgtgccagatccagcactgaagcatttgacaagacttgataccaattgcaccacatactttgttttgtattattgtttgggtgaaggtttgtagtaagaaggcaataattgtgaagtgaatgaatctctttttgattgtcatattatcccacatcctctgacaaacagaatatatagctttttgagtatgtaataacaaaattcctgtacaattcaaaaagtacttttatcgctggtatcccaaatctgttggtgcgtcatgatacagtacatatcccaatacggttggtacatcatgatacgacatgtatcccaattctgtgatttagatacagtttgtatgtcaattccatattctttctgctagagaatgtcaaccttcaatcatttgttaataaatttcagacattagaaagatgacactgtagtggagaaacaaataggatcaaggctactttaatgctatttataacctaccaggaaattctctagaatctggataagggatgttgaacgttttcttttataaatcacatttttacaacaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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