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2024-03-29 13:53:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_046706149            4277 bp    mRNA    linear   INV 14-FEB-2022
DEFINITION  PREDICTED: Haliotis rubra divergent protein kinase domain 1B-like
            (LOC124271079), mRNA.
ACCESSION   XM_046706149
VERSION     XM_046706149.1
DBLINK      BioProject: PRJNA801670
KEYWORDS    RefSeq; corrected model.
SOURCE      Haliotis rubra (blacklip abalone)
  ORGANISM  Haliotis rubra
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda;
            Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_025765525) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Haliotis rubra Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-104               QXJH01000157.1     1175076-1175179
            105-183             QXJH01000157.1     1177289-1177367
            184-309             QXJH01000157.1     1178221-1178346
            310-414             QXJH01000157.1     1179764-1179868
            415-615             QXJH01000157.1     1181787-1181987
            616-834             QXJH01000157.1     1182531-1182749
            835-835             "N"                1-1
            836-4277            QXJH01000157.1     1182750-1186191
FEATURES             Location/Qualifiers
     source          1..4277
                     /organism="Haliotis rubra"
                     /mol_type="mRNA"
                     /isolate="DU_JTF1"
                     /isolation_source="Aquaculture farm"
                     /db_xref="taxon:36100"
                     /chromosome="Unknown"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="Australia: Jade Tiger Abalone Farm, Indented
                     Head, Victoria"
                     /collection_date="2017"
                     /collected_by="Adam Miller"
     gene            1..4277
                     /gene="LOC124271079"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     5 samples with support for all annotated introns"
                     /db_xref="GeneID:124271079"
     CDS             79..1332
                     /gene="LOC124271079"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: divergent protein kinase
                     domain 1B-like"
                     /protein_id="XP_046562105.1"
                     /db_xref="GeneID:124271079"
                     /translation="
MFGCPISFRMRRRKRVRALLLSAIDRLISCLEFCQELSQGPWKMCLFVILILGLLYASVWRIFLYDPCNSSLIRKQLCSQYHTGEVSGALCYPMCIQNVQFFSYCEATEDEKSFVWHQTKFRVQMIDESVPWWKLQEGTSISEFRGQVSSFLQQKLGHSIYEDLTDKLLLYADFNEDGKLSLAEAQSLWRLIHIHEFLLLFIFQKSSTFPNINGTCGHFYGFQHAPIPRLYDKQPNSWLSKLFTNSYKWEFPXWAKRARVTLGIVEFSMDIYEEQGTKFLMCNISPLNFGITFDYEAMLTNTKDIASASSIKTLLHNQTCYSDSDCLYSRHCQSRCDRRSGRCSGEIIHPTLWFICDIIRDYLLFDAPKHLYYELKRLLGKCSLLSMKGDNADLKHAVVYHDLKSFLWKEIQYRPDA"
     misc_feature    196..588
                     /gene="LOC124271079"
                     /note="N-term cysteine-rich ER, FAM69; Region: PIP49_N;
                     pfam14875"
                     /db_xref="CDD:434279"
     misc_feature    640..1227
                     /gene="LOC124271079"
                     /note="Protein Kinases, catalytic domain; Region:
                     PKc_like; cl21453"
                     /db_xref="CDD:451246"
     polyA_site      4277
                     /gene="LOC124271079"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
cataatatttgcagacgatggaaataattgatcaaagatgatcgttatttctgcgacagattggtgcattactgacacatgtttggttgtccaatttcattcaggatgcgcagacggaagagagttcgagccttgttactgtctgccattgaccgactcatctcatgtttagaattctgtcaggaactgagtcaaggaccatggaagatgtgtctgtttgttatcctgatattggggctgctgtatgccagtgtgtggaggatcttcttatatgacccctgcaacagctcactcatcagaaaacagctgtgtagccagtatcatacaggcgaggtgtccggtgcactatgttaccccatgtgtatacaaaatgtacagttcttctcctattgtgaggcaacagaggatgagaagagctttgtatggcaccagacgaagttcagggttcagatgattgatgagtctgtgccgtggtggaagttgcaagaaggcacttcgatatccgagttcagaggtcaggtgtcatccttcttacagcagaaacttggacattccatatacgaggacttaacagacaagctcttactgtatgcagactttaatgaagacggaaagctgtctctggcagaagcacagtcactatggagactcatccacatacacgagtttctcttgctcttcatattccaaaagagttccacattccctaacattaatggaacctgcggccatttctatggattccagcatgctcccattcctcgtctgtatgacaagcaaccaaatagctggctcagcaaattattcaccaactcctacaaatgggaatttcccngctgggccaaacgtgctcgagtgaccctcggcattgtggaattcagcatggacatctacgaggaacagggcaccaaattcctcatgtgtaacatttcccctctcaatttcggcatcaccttcgactacgaagccatgctgacgaacacaaaagacattgcttcagcctctagcatcaagacccttctccacaatcaaacatgttactctgattctgattgtctttactccagacattgtcagtcccgatgtgatcggaggagtggaaggtgttcaggggagataattcatcccactttgtggtttatttgtgatatcattagagactatttgttgtttgatgcccccaaacatctgtattatgagttgaagagattgttaggtaaatgctctttgttgtcaatgaaaggagataatgctgatttaaagcatgctgtcgtataccacgatctcaaatcttttctctggaaagaaatacaatatagaccagatgcatagttaaatttagcagtttcttttcacaacagttttaattttagtttatgtaatatgttgtcttttacaacaacaaaatgtctgatagtgatttcagtaaattgtttcaggtttttagaccatgtaaaatatctttgataaaaccatcacttaatacaattggacataattcttccataattttccttttctttctgtgtaaagtttaaagtttgtattaatatcctcagatttggggaacatttatcatgctcggtattgtgggcatatgtttaatagagtgcttcaactctagttaattttagttgataatatcatcagatttggggagatatttagctgttgaataatgctcagtccctgaaaatatgatttaaacaagaaactcccttttaactgaaatttataaaaaaagagacttaatttagggctataataaaaactttatttagtgctatagtgaagactacattttgtgctattgccatgcagacttcatttttgccattgtggagacttcatttagttctatgtggcatttatagtgaagtgaagacttccttagagctatagtgaagacctcatttagggctatcttgaagacttccttagggctgtagtgaagacttccttagggctgtagtgaagacttccttagggctatagtgaagtgaagactcatttagggctatagtgaagacctcatttagggctatagtgaagacctcatttagggctatagtgaagatttccttagggctataatgaagacttccttagggctatagtgaagacctcatttatggaaatagttaagacttccttagagctatagtgaagacctccttagagctattgtgaagatgtcctttagggctattgtgaagcctttatttagggctattgtgaagacttcatttagagctatagtgaagacttcatttagggctatggtattacaatggtgttgatcaaagggaaaactaatatagtttggtgactgtgagacagactatgttgtattgttagatatgtagagaccatacctgttgttataataaagtcaacatatttaaaaatgtacctttaaaacctggttcctccattaacattaagtaccatgactgtaaaatgagatcaaatgttattcacttgtcactttgttttacaccatatggctagtttcattttgaaagagtatttcataattatcagattttatggaatgagctgcaattatgttgttaatgttatgtgctctgtattatttgtataacagtgtgtggtgagactatattctgtgaatattaattcttgccttttctttttttgattagtaagttaaatttagtatgttataaactatattaccacttgtaccaatggttgaatgttatgtaaatgaggtgtatttatatttatttaattacttgttgttgggtttcacctgtcagtttcatctgagcaacttctcggttcacggcctgtaggcatgtggcagatagatcttgtgtcgggctgaagtttctgatttgtattgcaccttatggcctgcagtaaatgtatgccttgattgacatgtttcaataagctgaaggacttgttcaatgggttaagagtttcatcagggtgtgcggcttataaagtctgtaagccctgatggcaacatggcagaatatgttttttaaaacactggaaagtcttgtgttgaccttttcaaccttttcacagttgcattactagaaacagtcatcagggttagatcttaagtcaaagtttatcaagactaataacaataaaataccactttgatgctaaactatgtggaaattgggaagtctgtaccagcccacaggaaattgtactagcctcgggctagtgtaagttataaccctgttaagactttcttgatctgtgaggtacactctaaccggttaaagggaaggtcgttctggtgtgacctgtaatgtcctcgggggcaatgtgaccagtaatgggatgttcacaggtcagtgtgacctataatgggatgtcttcaggtcagtatgacctgtaatgggatgttctcggggcagtgtgacctataatgggatgtcttcaggtcagtgtgacctgtattggcatgtcctcagttcaatgtgtagcagtagcaagaattaagctctgattgtaatgaaattgtatttgaggtagcatgttgttgaagatggaaatccaacttccctgaaaatggcatgagtgcttaactccaaatatcaccaaacaataaatggcgcggcatctgcattcagttagagaaagattttaacttaatattatgaaactgaaagccaatcaatacacagtatcaagtattttaccaggaagatatcccattaatcaggagaattaaacaagagaatgtgccagatccagcactgaagcatttgacaagacttgataccaattgcaccacatactttgttttgtattattgtttgggtgaaggtttgtagtaagaaggcaataattgtgaagtgaatgaatctctttttgattgtcatattatcccacatcctctgacaaacagaatatatagctttttgagtatgtaataacaaaattcctgtacaattcaaaaagtacttttatcgctggtatcccaaatctgttggtgcgtcatgatacagtacatatcccaatacggttggtacatcatgatacgacatgtatcccaattctgtgatttagatacagtttgtatgtcaattccatattctttctgctagagaatgtcaaccttcaatcatttgttaataaatttcagacattagaaagatgacactgtagtggagaaacaaataggatcaaggctactttaatgctatttataacctaccaggaaattctctagaatctggataagggatgttgaacgttttcttttataaatcacatttttacaacaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]