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2024-03-29 01:09:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_046409382            1836 bp    mRNA    linear   VRT 03-FEB-2022
DEFINITION  PREDICTED: Scatophagus argus vimentin like (viml), mRNA.
ACCESSION   XM_046409382
VERSION     XM_046409382.1
DBLINK      BioProject: PRJNA776026
KEYWORDS    RefSeq.
SOURCE      Scatophagus argus
  ORGANISM  Scatophagus argus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Scatophagidae; Scatophagus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_058505.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Scatophagus argus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Scatophagus argus"
                     /mol_type="mRNA"
                     /isolate="fScaArg1"
                     /db_xref="taxon:75038"
                     /chromosome="13"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="Singapore"
                     /lat_lon="1.3521 N 103.8198 E"
                     /collection_date="2018-08-06"
                     /collected_by="Byrappa Venkatesh"
     gene            1..1836
                     /gene="viml"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 76 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 25 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:124069884"
     CDS             85..1452
                     /gene="viml"
                     /codon_start=1
                     /product="vimentin like"
                     /protein_id="XP_046265338.1"
                     /db_xref="GeneID:124069884"
                     /translation="
MSYRSAPQSSYRKMFGGDRVVSRSSYSSRQFSSSVRSPRVSYGLSSAPTIYAAKTQRLRSSAAMPRLASENLDFSLSDAINTEFITNRTNEKVQMQSLNDRFASYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEIAQREDAESNMQSFRQDVDNAALARLDLERKVESLQDEINFLKKLHDEEMLELQNQIHQQQHVQVDMEIAKPDLTAALRDVRLQYENLASKNIQESEEWYKSKFADLTEAAARNNEALRVVKQEANDYRRQVQALTCEVDALKGTNESMERQMREMEENFSLETSGHQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPLPSFSSLNLRETMVDSKPHIETTTTKKVLIKTIETRDGQVINESTQNHDDME"
     misc_feature    109..351
                     /gene="viml"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    352..1281
                     /gene="viml"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
     polyA_site      1836
                     /gene="viml"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
agtagcagtttagcaaacgccttcccaggcgcacagttgggacgggatcaccgctgagctgttgtctgcacagatacaagcgagatgtcttacagatctgctccacagtcttcttacaggaagatgtttggcggggacagagtcgtatccaggagcagctactccagccgccagttctccagctcggtgcgctcccctcgggtgtcctacggtctctcctccgccccgaccatctacgcagcgaagacccagaggctccggagcagcgcagccatgccccggctggcctcagagaacttggacttctccctgtccgacgccataaacaccgagttcatcacgaaccgcaccaacgagaaggtgcagatgcagtcgctcaacgaccgtttcgccagttacatcgagaaggtccgcttcttagagcagcagaataagatcctgttggcggagctggagcagctgcggggcaaaggcacgtcccgggtcggagatctgtacgaggacgagatgcgggagctgaggcgccaggtggaccagctcaccaacgagaaggcccgggtggaagttcaccgggataacctggcagacgacatcgacaggctgagggagaagttgcaggatgagatagcccagcgggaggatgctgagagcaacatgcagagcttcagacaggatgtggacaatgctgccctcgccagactggacctggagcgaaaggtggagtcactccaggatgaaatcaacttcctcaagaagctgcatgatgaggaaatgctggagctgcagaaccagatccatcagcagcagcatgtgcaggtggacatggagatagctaaacctgacctgacggccgctctgagggacgtccgtctgcagtatgaaaacctggcctccaaaaacatccaggagtctgaggaatggtacaaatccaagtttgctgacctcaccgaagctgcagccaggaataacgaggccttgagagtggtcaaacaagaggccaatgactacaggcgccaggttcaggcacttacctgtgaggtggatgcccttaaaggaaccaatgagtccatggagcgccagatgagagagatggaggagaacttctctctggagacgagcggtcaccaggacaccatcggacgtctggaggaggacattcacaacatgaaggacgagatggcccgtcaccttcgtgagtaccaggacctcctaaatgtcaagatggccctggacattgagattgccacctacaggaagctgctggaaggagaggagagcagaatcactactccactgccgagcttctcgtctctaaacctgagagaaacaatggttgattccaaacctcatattgaaaccacaacaaccaagaaggttctcatcaagaccatcgagactcgggatggtcaggtgatcaacgagtcgacccagaaccacgacgacatggagtaaaaatttagtctttgtctttcccaaacaatcaacaaaagcaatataaagaaacacgactcactggggctacaagcaagcgaatgaaccaacaacacacaaaaagaaaacagcttctaaaagtgcctttatgtgtgatgatccagtaagcctgttagctgacacaaactgctttgcttcttctcctctgctgaaagtatcatcttttgtcacatttgtttagacacaataatgagctcagcacaacttagaaatccttaacaaaagtctgcaattcttttctttgtaaccaaagtagtatttttgatgcacactccaggaagcatttatgctaaagatgtcacaattgcctgtacgcagcaataaaccattaagatggtaactcaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]