LOCUS       XM_046323339            1710 bp    mRNA    linear   VRT 05-MAR-2022
DEFINITION  PREDICTED: Oncorhynchus gorbuscha vimentin-related 2 (vimr2), mRNA.
ACCESSION   XM_046323339
VERSION     XM_046323339.1
DBLINK      BioProject: PRJNA726253
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Oncorhynchus gorbuscha (pink salmon)
  ORGANISM  Oncorhynchus gorbuscha
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060195) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oncorhynchus gorbuscha Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Oncorhynchus gorbuscha"
                     /mol_type="mRNA"
                     /isolate="QuinsamMale2020"
                     /db_xref="taxon:8017"
                     /sex="male"
                     /tissue_type="Multiple"
                     /dev_stage="Spawning"
                     /ecotype="Even-year"
                     /collection_date="2020-07-28"
                     /collected_by="Quinsam River Hatchery"
                     /linkage_group="LG23"
     gene            1..1710
                     /gene="vimr2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 97% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:124010680"
     CDS             95..1276
                     /gene="vimr2"
                     /codon_start=1
                     /product="alpha-internexin"
                     /protein_id="XP_046179295.1"
                     /db_xref="GeneID:124010680"
                     /translation="

MAMLRVSSYRRQFEEQWSRNGRSGGGCGGQYRSSAVKARGAAAEECACVQLDFVAAKMLNKESLVRFAKDRSIIAALNDRFVALINMARCFEEDNESLEAQICELEERLTGQQTTSTTVAVPEYSLDAVMERLRKERDQSLFDVEELRRELECLQEQYEETVQQRTLVQLEQEDVGLEVDVVTTDCLALREQVNIYEEQLAHMEAQHETTVQNMVAPVEGPAAAGRGVLEFCNPDIKSALIDIKENYSQLAETIQCECRETGAVVAGAVVAIGAGKELTVARPAGVTGVGQITDVSELKKLIAELEKELAELEKCGEELEDEIEMKREAYVEEIFELECRLEEMRGQQHELQVQMTEQCDDYEELLGQKMAREIEIAAYRGLVEEEDERLCYL"

     misc_feature    323..1261
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

catgtataaagtcctcaaactggactcactgtcatccgtttgccattatttgttactgtagccccagcctgcagtacgtgtcccagtatcagccatggccatgctgagagtgtcgtcctaccgccggcagtttgaggagcagtggagtcggaatggacggtccggcggaggctgtggagggcagtaccgctcctcagcggtcaaggccaggggtgcggctgctgaggagtgtgcgtgtgtccagctggactttgtggctgccaagatgctcaataaggagagtctggtccgattcgctaaagaccgcagcatcattgccgccctaaatgatcgctttgtcgccctcatcaacatggcacgctgctttgaggaggacaatgagtctctggaggcccagatctgtgagctggaggagaggttgaccggccaacagaccacctccacaaccgtagctgtccctgaatacagcctggacgccgtgatggagagactgcgcaaggagagggaccagagcctgtttgatgtggaggagctgaggagagagctggagtgtctgcaggagcagtatgaggagaccgttcagcagaggaccctcgtccaactggaacaggaagacgttggcctggaagtggatgtagtgaccacagactgtctggccctgagggagcaggtgaacatctatgaggaacaactggctcacatggaggcacagcatgagacgacggttcagaacatggtggcccctgtagagggtccagctgcagcagggagaggagtcctggagttctgcaaccctgacatcaagtcagccctcatagatatcaaggagaactacagccagctggctgagaccatccagtgtgagtgcagggaaactggtgcggttgttgctggtgctgttgtcgccattggagctggaaaggagctgacggtggccagacctgcgggggtcacaggcgttggccagataacggacgtcagcgaactgaagaaactgattgcagagcttgaaaaggagcttgcagagctggagaagtgtggtgaggagctggaagatgagattgagatgaagagagaagcgtatgtggaggagatctttgagctggagtgtcgtcttgaggagatgcgggggcagcagcatgagctgcaggtccagatgacggaacaatgtgatgactacgaggagctgctgggtcagaagatggcccgggaaatcgagatcgctgcctacaggggtttggtggaagaggaggatgagaggctttgctacctgtgagaggaactgatgcagaccagaccaaccaacctgctttcggcgatggatatcctcccatacagatttcatgcgttgccaaaacacaacagacctaagtcggccattagagatcacatgaagctaaccgccacacaaccatttgagcagatataaaagtatcatgacagattaacgaggtctggagggcgtgccagggccattgataacaggtcactggcaggtgacccctgtcctataagaaagatgaagttgtctaacattgtggtggagggggatgggactggatagagtgtgtattcagtgtctgtgaaatttccttaagtggtctctatctgttgtggctacagtctctggagctaactcactgatatgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

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