LOCUS       XM_046140839            3551 bp    mRNA    linear   PLN 28-JAN-2022
DEFINITION  Boeremia exigua NRDE-2, necessary for RNA
            interference-domain-containing protein (C7974DRAFT_384349), mRNA.
ACCESSION   XM_046140839
VERSION     XM_046140839.1
DBLINK      BioProject: PRJNA801204
            BioSample: SAMN11533434
KEYWORDS    RefSeq.
SOURCE      Boeremia exigua
  ORGANISM  Boeremia exigua
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae;
            Didymellaceae; Boeremia.
REFERENCE   1  (bases 1 to 3551)
  AUTHORS   Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L.,
            Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D.,
            Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A.,
            Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V.,
            Martin,F.M. and Hacquard,S.
  TITLE     Genetic determinants of endophytism in the Arabidopsis root
            mycobiome
  JOURNAL   Nat Commun (2021) In press
REFERENCE   2  (bases 1 to 3551)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JAN-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3551)
  AUTHORS   Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B.,
            Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C.,
            Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R.,
            Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and
            Hacquard,S.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2021) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_025763518).
            
            ##Metadata-START##
            Organism Display Name :: Boeremia exigua MPI-SDFR-AT-0100
            GOLD Stamp ID         :: Gp0224132
            ##Metadata-END##
FEATURES             Location/Qualifiers
     source          1..3551
                     /organism="Boeremia exigua"
                     /mol_type="mRNA"
                     /strain="MPI-SDFR-AT-0100"
                     /db_xref="taxon:749465"
                     /chromosome="Unknown"
     gene            1..3551
                     /locus_tag="C7974DRAFT_384349"
                     /db_xref="GeneID:70170259"
     CDS             164..3220
                     /locus_tag="C7974DRAFT_384349"
                     /codon_start=1
                     /product="NRDE-2, necessary for RNA
                     interference-domain-containing protein"
                     /protein_id="XP_046003564.1"
                     /db_xref="GeneID:70170259"
                     /db_xref="InterPro:IPR013633"
                     /db_xref="JGIDB:Boeex1_384349"
                     /translation="

MSSSAPKFASFRPKPKVPEQPLSVESRREEKEHRKHSSSREKPREDRRRTPPREQREHDRDASSKRAYFSDRRGDLDIVKYGTLNRYDIPSYRRSGFGNVLGLPGQKIDREYSTEKKIYILPLVRRRQKRMLTDKSAARDSNRTLRLIKIAEDHYADASRDFIALSGTGKRKRTPGSDSEDDAPRADYRGIDEKPDPNKVDDADTYYESDTEAAIASSEITQKNSRLIRETRDDPGNLQAWLDLVEHQESMMKLDRAISELSAADRQNLADVRISTYEEALRKIGDNITNQIELQSGLLHEAQRHWDDAKVAGNWQDVLKRYPHSVKLWSRYIDFVQSTFSRFKYEECRAVFSNALEALRSVNSGDQTATAEARLHLIVRLTTMIQQAGYQELALAIWQAVLEFSLLAPQNLAAEKSKQFEEFWESEAPRIGETDCKGWRHTSIDDAVPPVCSITLDTSASRSSLEDFRKRELDSINKLRYPGRSTDEVGEDDPFHTVFFSDLKDYVGDFPELSADTQIDAFLCFCGLPAMIQQSEIGPWRTDSFLQSRTSSFETAAEMGSESLQYEEALSRYCQNPIARFRMTRDLLVQQTFSLDSSRLSPEFVRTTLKLLVTNIPDSECVGEYLLAFESRHFPSDVTKSAKRLLKERPSSVRLYNMYGTAEGQRSNSTKAVQIFSAALNIKSASVDRLELLESYVWQALQDDDKVEALRRLVQYHGGSFSEQSASASIETARAAFQASLEEGLLSQNYAHAVLNANHLALLAYLSGKSTISAALVAHSNLTAWFASHKLTSSVPAETHAQAIARLLAYHVTHTSIVKPALLRDALEPLIATFPDNTILLSVYAANEARFSIDDRLRGNMLRVLNTSSSSSVTTWAFAIHHESLKGEVAGSTHHSRRALYKRATHPDAAGAHCPALWEMYLRFELERFRAEQRLRPDKRPRRDGKKNKFEIGVEEARERVRETFYRGLKALPWCKDFVMLAFGEAGEVFGDEELGRLYGVMVEKEMRVYVEMDGLGA"

     misc_feature    362..>514
                     /locus_tag="C7974DRAFT_384349"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    848..1744
                     /locus_tag="C7974DRAFT_384349"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      

aatgctggataaacaggccaatgcagccgtcgataatacggaatcgtgagccttgaaatcaccggagtaatgtcttggcgaccacgttcccatcctctcgccaacatcatctgagcggtgcatctacggcaaccctcagccctcagcgcggtgcagtgccagcatgagctccagcgctccaaagtttgccagcttccggccgaagcccaaggtacccgagcagcctctgtcggttgaatctcgccgcgaagagaaggagcatagaaaacacagttcatcgagggagaagccgcgggaggatcgaaggagaacaccgccacgcgaacagcgggagcatgaccgagatgcatcttcgaaaagggcctatttcagcgaccgccgcggggatctcgacatcgtcaagtacgggacgctgaaccgctacgacataccaagctatcgacgcagtggcttcggcaatgtgcttgggctgcccggccagaagatcgaccgcgaatactcgactgaaaagaaaatctacatcttacctcttgtacgtcggcgtcaaaagcggatgctcaccgacaagtccgcagcaagagacagcaaccgtactctgcggcttattaagattgcagaggaccactatgccgacgcaagtcgtgacttcattgcgctgtcaggcaccggcaaacggaagcgaactcctggcagtgacagcgaggatgatgcgccacgcgcagactatcgtggcattgacgaaaagccggaccccaataaagttgacgacgcggatacctactacgagtcagacacggaggctgcaatcgccagctctgaaattacgcagaagaattccaggctcattcgagagactcgagatgatccaggaaacctgcaggcttggctggacctcgtcgaacatcaggaatcgatgatgaagctggatcgggcgatctctgagctctcagcggccgatcgacaaaaccttgctgatgtgcgcatctcaacatacgaagaagctttgcgcaagatcggcgacaacataacgaatcagatcgaactccaatccggactcttacatgaagcgcagagacattgggatgatgcgaaagtggcagggaattggcaagatgtgctcaagcgatatcctcacagtgtaaaactgtggtccagatatatcgacttcgttcaatcgacattctcgaggttcaagtatgaagaatgtcgcgctgtcttctcaaatgctctcgaggcactgcgatcggtgaactcgggagatcagacagctacagcagaagctaggctgcatctcattgtgcgtctcacaacgatgatccagcaagctgggtaccaggagcttgcattggccatctggcaagccgtactcgagttcagcctgctggctccccagaaccttgccgctgaaaagtcaaagcaattcgaagagttttgggagagcgaggcacctcgtattggcgagacagattgcaaaggctggagacatacatcgattgacgatgcagtgccgccggtgtgttctatcacgctcgatacatctgcttcaaggtcttcactcgaggactttcgaaaacgtgagcttgactccatcaacaaacttcggtatcctggccgctccacagatgaggtgggcgaagatgacccattccacacagtcttcttctctgatctgaaggattatgtcggtgactttcctgagctctcggcggatacacagattgatgcattcttgtgcttctgcgggcttcctgcaatgattcagcagagtgaaattggcccttggaggaccgattcgttcttgcaaagcaggacttcttcctttgagactgcagcagagatgggatcggaaagtcttcaatacgaggaagcactctcacgatactgtcaaaacccaatcgccagattccggatgacaagggatctgttggtgcaacagacattctcactcgacagctccaggctcagtccggagttcgtcaggaccaccctgaagttattggtcacaaatattccagacagcgagtgcgttggtgagtacctgctagctttcgagtcaaggcactttccttcagacgttactaaaagcgcaaaacgactgctcaaagaacgaccctccagcgtccgactctacaacatgtacgggactgctgaagggcagcgcagtaactctacaaaggcggttcaaatcttttctgccgcactcaacatcaaatctgcctccgtagatcgcctcgaacttttggagagctacgtttggcaggcattacaagacgacgacaaggtggaggctctccggcggttggtgcaataccatggcgggtcattctctgagcagtctgcatctgcctccattgagacagctcgtgccgcgttccaagcctcactcgaagaggggcttctgagccagaactacgcacacgcagtcctaaacgctaatcaccttgcactgctcgcctacctatccggtaaaagcactataagcgccgctctggtagcccacagcaacctcaccgcctggttcgcatcgcacaagctcacctcctcggtccccgcagaaacccacgcccaggccatagctcgtctgctcgcctaccacgtcacccacacctccatcgtaaaacccgcgctcctccgtgacgctctcgagcccctcatcgccacattccccgacaacacgatcctcctctccgtgtacgccgcaaacgaggcgcgcttttccatcgacgaccgcctgcgcggtaacatgctgcgcgtccttaatacctcgtcgagctcgagcgtcacaacctgggctttcgcgatccaccacgagagcctgaaaggcgaagtcgcaggctcaacacaccactcccgccgcgcgctgtacaagcgggctactcaccccgacgccgcgggcgcccactgcccagcgctgtgggagatgtatctgcgtttcgaactcgagcggtttcgcgccgaacagcgtctgcggccggataagcgaccacgcagggatggaaagaagaataagttcgagataggggttgaggaagcgcgtgaacgggtccgggagacgttctaccgcggactgaaggcgctgccgtggtgtaaggatttcgtgatgctggcttttggggaggcgggagaggtgttcggggatgaggagttggggcggttgtatggggttatggtggagaaggagatgagggtgtatgttgagatggatgggctgggggcttgaggttgatggtgggtacgtagtctgcgactcgagaatcgtaccgcaatacgtggatgtcgcgatgttagtactagacgtcactatggacggtgatatctcccagtgtcgaatggcaggagctatccggtgctactagcgcggtctagtgcgatgatcttgcggcaggtggggtgacttcacgtctcttatgagtcgttgcatcttgtttatcggcgacaaacagttgattagggttctcggcgtacgatcttcacctgtgtttgatcttcgcgagtactcactcgatgcacaatgcaagagctggggtgatagttgatccatttatcagtgc

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