2024-03-29 21:49:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046102255 3600 bp mRNA linear PLN 28-JAN-2022 DEFINITION Truncatella angustata NRDE-2, necessary for RNA interference-domain-containing protein (BKA67DRAFT_557418), mRNA. ACCESSION XM_046102255 VERSION XM_046102255.1 DBLINK BioProject: PRJNA801203 BioSample: SAMN08150287 KEYWORDS RefSeq. SOURCE Truncatella angustata ORGANISM Truncatella angustata Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Xylariomycetidae; Xylariales; Sporocadaceae; Truncatella. REFERENCE 1 (bases 1 to 3600) AUTHORS Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. TITLE Genetic determinants of endophytism in the Arabidopsis root mycobiome JOURNAL Nat Commun (2021) In press REFERENCE 2 (bases 1 to 3600) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3600) AUTHORS Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (07-APR-2021) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025763382). ##Metadata-START## Organism Display Name :: Truncatella angustata MPI-SDFR-AT-0073 GOLD Stamp ID :: Gp0141919 ##Metadata-END## FEATURES Location/Qualifiers source 1..3600 /organism="Truncatella angustata" /mol_type="mRNA" /strain="MPI-SDFR-AT-0073" /db_xref="taxon:152316" /chromosome="Unknown" /country="France: Saint-Die" gene 1..3600 /locus_tag="BKA67DRAFT_557418" /db_xref="GeneID:70131147" CDS 108..3305 /locus_tag="BKA67DRAFT_557418" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_045962446.1" /db_xref="GeneID:70131147" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Truan1_557418" /translation="
MSSRGGSSVPKFTSFKKNSEPLIPTPAKDEEQEKDWQEDRRVRREGKPRDTGRHKRSKDLGRASDGRSTESEREPESKYDVIHRPAPPQPATDELFTIDKRGDPLIRRYGANDRYKVPAYRRFGAGRLLGSKSFFRIDRSGNREVFFLRGYGENGSQLSRDRKTVLAKVGRARSELVRVRPDKVQTFTGAEDFLPLKQLRKRKRTQSGSDGSASNEGPSYRSIHGMSKKHENSDSDEAYGSDISTEFDLTDTNDPIKLKNIQLTARVKEQPDDIDAWVQLAEHQDIIRDLNSPEGRAATQAEIKSYADIKHSMLEKALKHSKTPEQAANLRLRMMQEGSKIWDLKIVTQRWEELLADHGANFEIWKAYMTFRQVNLSTFRYDETKQLYTEKIRATATEMAEHSSESRKMSLYDQLIVVFSRATHFIADSGYAELAVAAWQAMLELHFCRPVALANASPSLSLSGLQTFWESEVARIGDENAKGWGIFESTGGREDPPEPKLFDSSIPSSTRDPYKAWAAFERHRSQDAKIPARTMDDGTEDDPYRVIMYSDIEDLLFFIPTPSLSLVQEQLLDAFLLFCQLPPVFGSSVPIRTLLQDQVTHGGSTGFIVQEYEPELQDDAPGGIKPPIFDHYFRTMAKSLDVMFSYQWFSYMKPLPGTISSWQYTVVSNVLKHLTSTFRKTELATYYLCFESTNNTGSIKKAAKTLLKKESNNVDLYIAFARSEFTKGSQDVAMNVIPAALGLKDLTMHDRVRLCSTWAWMELENNGILQASMRLCQASEDAAVNDTISPLQVLKVRQLLTRNRDHFVSSREPDIALIYAEALALLEYTTGNSGKEPKSGNQGDIWSVIASVTLCSESFISRGFSRHLAHEKLLQSSAHLLYYHASHGSYRPAFFRQTIASYIRLFPRNTVFLRLYAWREERLSIEDRVRAILDETVLTSTDDCVSSRVFAIEHEMVRGNPHSTHAAFERAVESDVCKHHIGIWISYIRYCHQKKELRPRAKDVFYRAIQRCPWSKEVFMEAFFTLIREMDSLELKSVYHTFCDKGLRVHVELDEFVQQWKLVQR"
misc_feature 891..1847 /locus_tag="BKA67DRAFT_557418" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
cagtcttaagaagtcaccgtccgtcaaatgtgaccagccgcagtaatctacaatgactcggtgacaggaattattttatgtcgtgatgaccgacgaggagtgaagctatgtcatccagaggaggatcaagtgtgccaaagttcacttcattcaagaagaactctgaacccctaatcccaaccccagcaaaggatgaagagcaggagaaagactggcaagaggatcgtcgcgtgagacgagaaggaaaacctcgcgatactggaaggcataaacgctcgaaagaccttggtcgggcctcagacggtcgcagcacagagagcgaaagagaaccagagtccaagtatgatgtcatccaccgcccagcgccgcctcaaccagccaccgatgagctcttcactatcgacaaacgcggagatcctctgatcaggcggtacggtgccaatgaccgttataaagttcctgcctaccgcagatttggcgccggtcgccttctgggatcaaagtccttcttcagaattgaccgtagcggaaaccgtgaagtattcttccttcgtggttatggtgaaaacggctcacaactcagtcgcgaccgcaagaccgtgctagccaaggtcggccgagccaggtctgagctggtgcgagtccggccggacaaagtacagacatttactggggccgaggatttccttccgctgaaacaattaagaaagcgaaagcgcactcagtcagggtcagatgggtctgcgagcaacgaaggaccctcatacaggtccatacatggcatgagcaagaaacacgaaaactccgatagtgacgaggcatacggcagcgatatttctacggagttcgatctaacagatacgaatgacccaatcaagttgaagaatattcagctgacagcccgggtcaaggagcaaccagacgacattgatgcttgggttcaactagcagagcaccaagatatcatacgtgatttgaatagccctgaagggcgtgctgccacccaagcagaaatcaaaagctacgcggacatcaagcattctatgcttgaaaaggcgttgaaacattcgaaaacgcctgagcaggctgcaaatttgcgcctgcgtatgatgcaggaagggtctaaaatatgggacctcaagattgtcacacaacgatgggaagagctcctagccgaccatggtgccaatttcgagatatggaaggcatatatgactttcagacaagtcaacctatccacatttcgatatgacgagacgaagcagctatataccgaaaaaatacgagcgacagcaacagaaatggcggagcattcatctgagtcacggaagatgtccttgtatgaccagcttatcgtagtattctcgagagcaacacacttcatcgcagactcaggctatgcagagctggctgtagcagcatggcaagctatgctcgagcttcacttctgtcggccggtcgcattggccaatgcctccccttcgttgagtttgtcgggtctacagacgttctgggaaagcgaagtagcgcgtattggcgatgaaaatgcgaaaggatggggtatatttgaaagtactggaggtcgcgaggatccaccagaacccaaactctttgattccagcattccttctagtacgagagacccttacaaagcgtgggcagcttttgagaggcatagatctcaagatgcgaagatcccagcacgcaccatggatgatgggacggaagacgacccatatcgtgtcatcatgtattccgacatagaagacctattgttcttcattccaactccctctttatcgctcgtacaggaacagctattggatgcattcctgcttttctgccagctccctcccgtatttggttctagcgtcccgataaggactctacttcaggatcaggttactcatggtggtagcactggatttatagtgcaagaatacgaacctgagctgcaagacgatgctcccggaggtatcaagccacctatattcgatcattatttccgaaccatggcaaaatctctggacgtcatgttctcttatcaatggttcagctacatgaaaccactccctggcaccatttcatcttggcaatacactgtggtatcgaacgtgttgaagcacctgacatcgacttttcgtaaaacggagcttgcaacatactatctttgtttcgaaagtacaaataacacaggaagcatcaagaaagccgccaaaacgcttctgaaaaaggagtcgaataatgtagatctctacattgcgtttgccagatcagagttcaccaagggaagccaagacgtagctatgaacgtgattccagctgctctaggcttgaaagacctgacgatgcatgaccgagtgcggctttgtagcacctgggcgtggatggagctggagaacaatggtattcttcaggcgtcaatgcgactgtgccaggcctcagaggatgcagcagtcaacgatacaatatcaccgcttcaggttcttaaggttcggcagctgttgacaaggaaccgcgatcatttcgtatcctctagagagccagacatcgctttgatctacgctgaggccttggctctcctcgaatacaccacagggaatagcggtaaagaaccaaagtctggaaatcaaggtgatatatggtctgttatagcaagcgtcacgttgtgttcggaaagcttcatctcccgtggattctcgcggcacttggcacatgaaaagttgttgcagtcctccgcacatcttctttactatcatgctagccacggttcgtacagaccagcattcttccgccaaaccatagcgagctacattcgacttttcccaaggaacacggtctttttaagattatatgcctggcgagaggagcgcctcagcatagaggatagagtacgtgcgattctggacgaaaccgtactaacatctacagacgactgtgtcagcagccgagtcttcgccatagagcacgagatggtcaggggaaaccctcattccactcatgcagcctttgagcgagcagtagaaagcgatgtctgcaagcatcacatcgggatatggatatcgtacatacggtattgtcaccaaaagaaggagctgcggccgagagctaaggatgtgttctatcgtgcaattcagagatgtccgtggtcaaaggaagtatttatggaagcatttttcacactgataagggagatggactccttggagctaaaatcagtctatcatactttctgcgataaaggcttgagggtacacgttgagctcgatgaatttgttcagcaatggaagctggttcagagatgataggcaagtcaacaatggtctcgactgtcattaccgtcttgcccccagaattctaggatgatgcatattcgtgggattttcaataaacgccgataatgatcgttgtccgtgatgatctccggtctgctcatatcgtgccgtcgaaccattgttcatagccagctgttaactccgatgtctgggaaggttccaacggtgaggcaattttgaaggtcatatcgtatacattttatcatgatgtcattcgagcaatgcccacctggggacccgcatacaaacagttctgcttcccacg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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