GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 21:49:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_046102255            3600 bp    mRNA    linear   PLN 28-JAN-2022
DEFINITION  Truncatella angustata NRDE-2, necessary for RNA
            interference-domain-containing protein (BKA67DRAFT_557418), mRNA.
ACCESSION   XM_046102255
VERSION     XM_046102255.1
DBLINK      BioProject: PRJNA801203
            BioSample: SAMN08150287
KEYWORDS    RefSeq.
SOURCE      Truncatella angustata
  ORGANISM  Truncatella angustata
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Xylariomycetidae; Xylariales; Sporocadaceae;
            Truncatella.
REFERENCE   1  (bases 1 to 3600)
  AUTHORS   Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L.,
            Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D.,
            Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A.,
            Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V.,
            Martin,F.M. and Hacquard,S.
  TITLE     Genetic determinants of endophytism in the Arabidopsis root
            mycobiome
  JOURNAL   Nat Commun (2021) In press
REFERENCE   2  (bases 1 to 3600)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JAN-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3600)
  AUTHORS   Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B.,
            Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C.,
            Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R.,
            Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and
            Hacquard,S.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2021) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_025763382).
            
            ##Metadata-START##
            Organism Display Name :: Truncatella angustata MPI-SDFR-AT-0073
            GOLD Stamp ID         :: Gp0141919
            ##Metadata-END##
FEATURES             Location/Qualifiers
     source          1..3600
                     /organism="Truncatella angustata"
                     /mol_type="mRNA"
                     /strain="MPI-SDFR-AT-0073"
                     /db_xref="taxon:152316"
                     /chromosome="Unknown"
                     /country="France: Saint-Die"
     gene            1..3600
                     /locus_tag="BKA67DRAFT_557418"
                     /db_xref="GeneID:70131147"
     CDS             108..3305
                     /locus_tag="BKA67DRAFT_557418"
                     /codon_start=1
                     /product="NRDE-2, necessary for RNA
                     interference-domain-containing protein"
                     /protein_id="XP_045962446.1"
                     /db_xref="GeneID:70131147"
                     /db_xref="InterPro:IPR013633"
                     /db_xref="JGIDB:Truan1_557418"
                     /translation="
MSSRGGSSVPKFTSFKKNSEPLIPTPAKDEEQEKDWQEDRRVRREGKPRDTGRHKRSKDLGRASDGRSTESEREPESKYDVIHRPAPPQPATDELFTIDKRGDPLIRRYGANDRYKVPAYRRFGAGRLLGSKSFFRIDRSGNREVFFLRGYGENGSQLSRDRKTVLAKVGRARSELVRVRPDKVQTFTGAEDFLPLKQLRKRKRTQSGSDGSASNEGPSYRSIHGMSKKHENSDSDEAYGSDISTEFDLTDTNDPIKLKNIQLTARVKEQPDDIDAWVQLAEHQDIIRDLNSPEGRAATQAEIKSYADIKHSMLEKALKHSKTPEQAANLRLRMMQEGSKIWDLKIVTQRWEELLADHGANFEIWKAYMTFRQVNLSTFRYDETKQLYTEKIRATATEMAEHSSESRKMSLYDQLIVVFSRATHFIADSGYAELAVAAWQAMLELHFCRPVALANASPSLSLSGLQTFWESEVARIGDENAKGWGIFESTGGREDPPEPKLFDSSIPSSTRDPYKAWAAFERHRSQDAKIPARTMDDGTEDDPYRVIMYSDIEDLLFFIPTPSLSLVQEQLLDAFLLFCQLPPVFGSSVPIRTLLQDQVTHGGSTGFIVQEYEPELQDDAPGGIKPPIFDHYFRTMAKSLDVMFSYQWFSYMKPLPGTISSWQYTVVSNVLKHLTSTFRKTELATYYLCFESTNNTGSIKKAAKTLLKKESNNVDLYIAFARSEFTKGSQDVAMNVIPAALGLKDLTMHDRVRLCSTWAWMELENNGILQASMRLCQASEDAAVNDTISPLQVLKVRQLLTRNRDHFVSSREPDIALIYAEALALLEYTTGNSGKEPKSGNQGDIWSVIASVTLCSESFISRGFSRHLAHEKLLQSSAHLLYYHASHGSYRPAFFRQTIASYIRLFPRNTVFLRLYAWREERLSIEDRVRAILDETVLTSTDDCVSSRVFAIEHEMVRGNPHSTHAAFERAVESDVCKHHIGIWISYIRYCHQKKELRPRAKDVFYRAIQRCPWSKEVFMEAFFTLIREMDSLELKSVYHTFCDKGLRVHVELDEFVQQWKLVQR"
     misc_feature    891..1847
                     /locus_tag="BKA67DRAFT_557418"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
cagtcttaagaagtcaccgtccgtcaaatgtgaccagccgcagtaatctacaatgactcggtgacaggaattattttatgtcgtgatgaccgacgaggagtgaagctatgtcatccagaggaggatcaagtgtgccaaagttcacttcattcaagaagaactctgaacccctaatcccaaccccagcaaaggatgaagagcaggagaaagactggcaagaggatcgtcgcgtgagacgagaaggaaaacctcgcgatactggaaggcataaacgctcgaaagaccttggtcgggcctcagacggtcgcagcacagagagcgaaagagaaccagagtccaagtatgatgtcatccaccgcccagcgccgcctcaaccagccaccgatgagctcttcactatcgacaaacgcggagatcctctgatcaggcggtacggtgccaatgaccgttataaagttcctgcctaccgcagatttggcgccggtcgccttctgggatcaaagtccttcttcagaattgaccgtagcggaaaccgtgaagtattcttccttcgtggttatggtgaaaacggctcacaactcagtcgcgaccgcaagaccgtgctagccaaggtcggccgagccaggtctgagctggtgcgagtccggccggacaaagtacagacatttactggggccgaggatttccttccgctgaaacaattaagaaagcgaaagcgcactcagtcagggtcagatgggtctgcgagcaacgaaggaccctcatacaggtccatacatggcatgagcaagaaacacgaaaactccgatagtgacgaggcatacggcagcgatatttctacggagttcgatctaacagatacgaatgacccaatcaagttgaagaatattcagctgacagcccgggtcaaggagcaaccagacgacattgatgcttgggttcaactagcagagcaccaagatatcatacgtgatttgaatagccctgaagggcgtgctgccacccaagcagaaatcaaaagctacgcggacatcaagcattctatgcttgaaaaggcgttgaaacattcgaaaacgcctgagcaggctgcaaatttgcgcctgcgtatgatgcaggaagggtctaaaatatgggacctcaagattgtcacacaacgatgggaagagctcctagccgaccatggtgccaatttcgagatatggaaggcatatatgactttcagacaagtcaacctatccacatttcgatatgacgagacgaagcagctatataccgaaaaaatacgagcgacagcaacagaaatggcggagcattcatctgagtcacggaagatgtccttgtatgaccagcttatcgtagtattctcgagagcaacacacttcatcgcagactcaggctatgcagagctggctgtagcagcatggcaagctatgctcgagcttcacttctgtcggccggtcgcattggccaatgcctccccttcgttgagtttgtcgggtctacagacgttctgggaaagcgaagtagcgcgtattggcgatgaaaatgcgaaaggatggggtatatttgaaagtactggaggtcgcgaggatccaccagaacccaaactctttgattccagcattccttctagtacgagagacccttacaaagcgtgggcagcttttgagaggcatagatctcaagatgcgaagatcccagcacgcaccatggatgatgggacggaagacgacccatatcgtgtcatcatgtattccgacatagaagacctattgttcttcattccaactccctctttatcgctcgtacaggaacagctattggatgcattcctgcttttctgccagctccctcccgtatttggttctagcgtcccgataaggactctacttcaggatcaggttactcatggtggtagcactggatttatagtgcaagaatacgaacctgagctgcaagacgatgctcccggaggtatcaagccacctatattcgatcattatttccgaaccatggcaaaatctctggacgtcatgttctcttatcaatggttcagctacatgaaaccactccctggcaccatttcatcttggcaatacactgtggtatcgaacgtgttgaagcacctgacatcgacttttcgtaaaacggagcttgcaacatactatctttgtttcgaaagtacaaataacacaggaagcatcaagaaagccgccaaaacgcttctgaaaaaggagtcgaataatgtagatctctacattgcgtttgccagatcagagttcaccaagggaagccaagacgtagctatgaacgtgattccagctgctctaggcttgaaagacctgacgatgcatgaccgagtgcggctttgtagcacctgggcgtggatggagctggagaacaatggtattcttcaggcgtcaatgcgactgtgccaggcctcagaggatgcagcagtcaacgatacaatatcaccgcttcaggttcttaaggttcggcagctgttgacaaggaaccgcgatcatttcgtatcctctagagagccagacatcgctttgatctacgctgaggccttggctctcctcgaatacaccacagggaatagcggtaaagaaccaaagtctggaaatcaaggtgatatatggtctgttatagcaagcgtcacgttgtgttcggaaagcttcatctcccgtggattctcgcggcacttggcacatgaaaagttgttgcagtcctccgcacatcttctttactatcatgctagccacggttcgtacagaccagcattcttccgccaaaccatagcgagctacattcgacttttcccaaggaacacggtctttttaagattatatgcctggcgagaggagcgcctcagcatagaggatagagtacgtgcgattctggacgaaaccgtactaacatctacagacgactgtgtcagcagccgagtcttcgccatagagcacgagatggtcaggggaaaccctcattccactcatgcagcctttgagcgagcagtagaaagcgatgtctgcaagcatcacatcgggatatggatatcgtacatacggtattgtcaccaaaagaaggagctgcggccgagagctaaggatgtgttctatcgtgcaattcagagatgtccgtggtcaaaggaagtatttatggaagcatttttcacactgataagggagatggactccttggagctaaaatcagtctatcatactttctgcgataaaggcttgagggtacacgttgagctcgatgaatttgttcagcaatggaagctggttcagagatgataggcaagtcaacaatggtctcgactgtcattaccgtcttgcccccagaattctaggatgatgcatattcgtgggattttcaataaacgccgataatgatcgttgtccgtgatgatctccggtctgctcatatcgtgccgtcgaaccattgttcatagccagctgttaactccgatgtctgggaaggttccaacggtgaggcaattttgaaggtcatatcgtatacattttatcatgatgtcattcgagcaatgcccacctggggacccgcatacaaacagttctgcttcccacg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]