LOCUS       XM_046030436            2240 bp    mRNA    linear   VRT 05-MAR-2022
DEFINITION  PREDICTED: Micropterus dolomieu vimentin-related 2 (vimr2), mRNA.
ACCESSION   XM_046030436
VERSION     XM_046030436.1
DBLINK      BioProject: PRJNA800460
KEYWORDS    RefSeq.
SOURCE      Micropterus dolomieu (smallmouth bass)
  ORGANISM  Micropterus dolomieu
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei;
            Centrarchidae; Micropterus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060168) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Micropterus dolomieu Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Micropterus dolomieu"
                     /mol_type="mRNA"
                     /isolate="WLL.071019.BEF.003"
                     /isolation_source="freshwater lake"
                     /db_xref="taxon:147949"
                     /tissue_type="fin"
                     /ecotype="Adirondacks"
                     /country="USA: Adirondacks, Woodhull Lake"
                     /lat_lon="43.598747 N 74.970827 W"
                     /collection_date="2019-07-10"
                     /linkage_group="LG19"
     gene            1..2240
                     /gene="vimr2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:123957555"
     CDS             149..1312
                     /gene="vimr2"
                     /codon_start=1
                     /product="desmin"
                     /protein_id="XP_045886392.1"
                     /db_xref="GeneID:123957555"
                     /translation="

MAMLRVSSYRKLFEDDNWSRNGGLSMHTSFPSLRVAAVEKCDCDKLDFVAAKALNKEGLNRFVQDRTIIATLNDRLVRLIELAHCFEEENESLECQIVKLEEKLNSRQVTSSITSTVAEPEYSLDAVVERLRRERDAILCDTEELQKELELLMKEYEKAAQQRVLLQQERQDVAEEVDAVTAECLALREQVAIYEEQLANMEAQHKEAVETLLEPAERTTGAVAAIKFGSPDMTPALDVKEYYCQLAESLQYECGAASSAVVHSDDGRQLEVGGAVGSTVKDLPKIKDISEIKMLISELQKELAELEKCNEELEDEAERKKAAYMDEIAELECTIDEMRHQEVNFQVQMKDQCEDYKELLSEKMARDMEIAAYRCLVKEEEERLCNL"

     misc_feature    338..1297
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
     polyA_site      2240
                     /gene="vimr2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

cgctatatttactccactcagtggccagtgagagatccttcacctcagcgctacattctcattccctgtgaatataaaacctccaccttggacctgctatcaccatttgcctgttgtgttgtggcccactttgaacccatccaaagtcatggccatgcttagagtttcttcttaccgcaagctgtttgaggatgataattggagtcgaaatggagggttgagtatgcatacttcctttccttctctcagggttgcggccgttgagaagtgtgactgtgacaagttagattttgtggctgccaaggcgctgaacaaggaaggtctgaaccggtttgtccaggaccgcaccatcattgctacccttaatgaccgcctggtcaggcttattgaactggcccattgttttgaggaggagaatgagtctcttgaatgtcagattgttaaactagaagagaagctgaacagtcgacaagtcacctccagcatcacctccactgtggctgagcctgaatacagtctggatgcagtggtggaaagactgcgcagggagagggatgcgattctgtgtgacaccgaggagctgcagaaagagcttgaacttctgatgaaagagtacgagaaggctgcacagcagagggtcctcttacagcaggaacgacaagatgtagctgaggaagtggatgccgtgacagcagagtgcttggcactgagggagcaagtggctatctatgaggagcagctggccaacatggaggctcagcacaaggaggcagtggagactctgctggagccagctgaacggactacaggagcagtggcagctattaaatttggcagccctgatatgactccagccttggacgtaaaggagtactactgccagctggctgagagcctccagtacgagtgtggtgcagcctcttctgctgtggttcacagtgatgatggaagacaactggaagtgggaggagctgtagggtcaacagtgaaagacttgccaaagataaaggacatcagtgagataaagatgctgatttcagagctacaaaaggagcttgcagagctcgagaagtgtaacgaggagctggaggacgaggctgagaggaagaaggctgcctacatggacgagattgctgagctggagtgtactatagatgaaatgcggcaccaggaggtcaacttccaagtgcagatgaaggatcagtgtgaagactacaaggagctgctcagtgagaagatggccagagacatggaaattgctgcctacaggtgtctggttaaggaagaagaggagaggctgtgcaacctgtgatctgtgagactggctggctggattgtggctggatgctcccccaccagttgatttgaaaatacacaaaagagaaacgtgaaaaaccacacccaaataagcactaggatgaagctttaggaaccaacacagcaatgtaagcagatgtaaacttatcatggccgattaatggcatctggaggcctaagccgggccattgataacaggtcactggcaaatgaccccgggactctaagaaagatggagctgtctaaatttggtgggaggatgtcgggttgtgcgatgagtgtgtatccgttcagtgtctggcagggatatttccttaagtgggttttatctgtaccagctcactgatatgtttcataaatgttttgtcccctctttgttaaacaagtcccacacaaacacacagatagagagacacacacacacacacagacacgcacacgcacacacacacgcacacacaagctaaactgcacggctctgtggagtcatcccacctcgtccatcactcaaactgagtctgattaccagctcttaacccttgacctcttcactgtcagtaaatgtattgacagctctccctttggtaactaaaagcatcccacctttcgtttgcttttacagacatgcaattatgatgttgttgggtttttgttatttttacaaataactgacagtagtgtgcaatgcactgtttgcttttcaaatggttcatgaagttgtttttctgcagctcttacaaagcgagcacctggatctttctacaagaaaatcctgttccattcattatttctcctttgaaaagcaatggtccaatattctgtcgtttcaaaaataagcatttggtaattcattcctttgtaatcctttccttattttctacatgactttcaagctgtctgtaataaatcatctttggttcctg

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