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2024-03-28 23:19:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_045874337            1922 bp    mRNA    linear   MAM 22-MAR-2023
DEFINITION  PREDICTED: Mirounga angustirostris vimentin (VIM), mRNA.
ACCESSION   XM_045874337
VERSION     XM_045874337.1
DBLINK      BioProject: PRJNA795490
KEYWORDS    RefSeq.
SOURCE      Mirounga angustirostris (Northern elephant seal)
  ORGANISM  Mirounga angustirostris
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Pinnipedia; Phocidae; Mirounga.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_072358) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_021288785.2-RS_2023_03
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 03/17/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1922
                     /organism="Mirounga angustirostris"
                     /mol_type="mRNA"
                     /isolate="JK_09032017"
                     /db_xref="taxon:9716"
                     /chromosome="3"
                     /tissue_type="skeletal muscle"
                     /collection_date="2017-09-03"
     gene            1..1922
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 mRNAs, 373 ESTs, 34
                     Proteins"
                     /db_xref="GeneID:123844185"
     CDS             205..1605
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_045730293.1"
                     /db_xref="GeneID:123844185"
                     /translation="
MSARSVSSSSYRRMFGGPGTGSRPSSTRGYVTTSTRTYTLGSALRPSTGRSLYASSPGGAYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDILRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     misc_feature    244..507
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    508..1434
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
     polyA_site      1922
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ggaggggaccctctttcctaacgccttataaaaactgcgccctccgcggggtccggtcctctgccactctcgctccggtatcccccgcgccagagacgcagcagcactcccaccgcccacacccaccgcgccctcgctcgcctgcactccccgagccggtccgtgccgccgcagccgcccggcccaccgccaccctctgcagtcatgtccgccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggcccgggcaccgggagccggccgagctccacacggggctacgtgaccacgtccacccgcacctacaccctgggcagcgcgttgcgccccagcaccggccgcagcctctatgcctcgtcccccggaggcgcgtacgccacgcgctcctccgccgtgcgcctgcgaagcagtgtgcccggcgtgcgcctgctgcaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaagtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcacgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctggccgaggacatcttgcggctccgggagaagttgcaagaggagatgcttcagagagaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttctttggcacgtcttgaccttgagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactacatgatgaggaaatccaggagctgcaggcccaaattcaggaccagcatgtccaaatcgatatggatgtttccaagcctgacctcacggctgccctgcgtgacgtacgccagcagtatgaaagcgtggctgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgccgacctctctgaggctgctaaccggaacaatgatgctctgcgccaggcgaagcaggagtcgaatgagtaccggagacaggtgcagtccctcacctgtgaagtggacgccctcaaagggactaacgagtctctggaacgccagatgcgtgaaatggaagagaacttcgccgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggcccgtcaccttcgggaataccaggacctgctgaatgtcaagatggctctcgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggattgctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattccctccctctggttgacactcactcaaaaaggacacttctgattaagacggttgagactagagatggacaggttatcaatgaaacttctcagcatcacgatgaccttgagtaaaaagggcacagagtcagtgcagcaatactaccagcaagaataaaaaagaaatccgtatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataatctctagttcttaagaaccaacactcttaaaagatttaggaaaaagttcacaacataatctagtttatgaagaaaacttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgctttttttccaacaaatatctgaccaacttgtttctgcttcaataaatctttggaaaattc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]