2024-03-28 23:19:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045874337 1922 bp mRNA linear MAM 22-MAR-2023 DEFINITION PREDICTED: Mirounga angustirostris vimentin (VIM), mRNA. ACCESSION XM_045874337 VERSION XM_045874337.1 DBLINK BioProject: PRJNA795490 KEYWORDS RefSeq. SOURCE Mirounga angustirostris (Northern elephant seal) ORGANISM Mirounga angustirostris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_072358) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_021288785.2-RS_2023_03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 03/17/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1922 /organism="Mirounga angustirostris" /mol_type="mRNA" /isolate="JK_09032017" /db_xref="taxon:9716" /chromosome="3" /tissue_type="skeletal muscle" /collection_date="2017-09-03" gene 1..1922 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 373 ESTs, 34 Proteins" /db_xref="GeneID:123844185" CDS 205..1605 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_045730293.1" /db_xref="GeneID:123844185" /translation="
MSARSVSSSSYRRMFGGPGTGSRPSSTRGYVTTSTRTYTLGSALRPSTGRSLYASSPGGAYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDILRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 244..507 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 508..1434 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 1922 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggaggggaccctctttcctaacgccttataaaaactgcgccctccgcggggtccggtcctctgccactctcgctccggtatcccccgcgccagagacgcagcagcactcccaccgcccacacccaccgcgccctcgctcgcctgcactccccgagccggtccgtgccgccgcagccgcccggcccaccgccaccctctgcagtcatgtccgccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggcccgggcaccgggagccggccgagctccacacggggctacgtgaccacgtccacccgcacctacaccctgggcagcgcgttgcgccccagcaccggccgcagcctctatgcctcgtcccccggaggcgcgtacgccacgcgctcctccgccgtgcgcctgcgaagcagtgtgcccggcgtgcgcctgctgcaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaagtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcacgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctggccgaggacatcttgcggctccgggagaagttgcaagaggagatgcttcagagagaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttctttggcacgtcttgaccttgagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactacatgatgaggaaatccaggagctgcaggcccaaattcaggaccagcatgtccaaatcgatatggatgtttccaagcctgacctcacggctgccctgcgtgacgtacgccagcagtatgaaagcgtggctgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgccgacctctctgaggctgctaaccggaacaatgatgctctgcgccaggcgaagcaggagtcgaatgagtaccggagacaggtgcagtccctcacctgtgaagtggacgccctcaaagggactaacgagtctctggaacgccagatgcgtgaaatggaagagaacttcgccgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggcccgtcaccttcgggaataccaggacctgctgaatgtcaagatggctctcgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggattgctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattccctccctctggttgacactcactcaaaaaggacacttctgattaagacggttgagactagagatggacaggttatcaatgaaacttctcagcatcacgatgaccttgagtaaaaagggcacagagtcagtgcagcaatactaccagcaagaataaaaaagaaatccgtatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataatctctagttcttaagaaccaacactcttaaaagatttaggaaaaagttcacaacataatctagtttatgaagaaaacttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgctttttttccaacaaatatctgaccaacttgtttctgcttcaataaatctttggaaaattc
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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