2024-04-20 17:37:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045476708 2854 bp mRNA linear MAM 17-DEC-2021 DEFINITION PREDICTED: Leopardus geoffroyi argonaute RISC catalytic component 3 (AGO3), transcript variant X5, mRNA. ACCESSION XM_045476708 VERSION XM_045476708.1 DBLINK BioProject: PRJNA786922 KEYWORDS RefSeq. SOURCE Leopardus geoffroyi (Geoffroy's cat) ORGANISM Leopardus geoffroyi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Leopardus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059328) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Leopardus geoffroyi Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2854 /organism="Leopardus geoffroyi" /mol_type="mRNA" /isolate="Oge1" /db_xref="taxon:46844" /chromosome="C1" /sex="male" /cell_type="Fibroblast" /tissue_type="Fibroblast" /dev_stage="adult" gene 1..2854 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns" /db_xref="GeneID:123597600" CDS 297..2357 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X4" /protein_id="XP_045332664.1" /db_xref="GeneID:123597600" /translation="
MIFRYIVFANFCSSYRFQSTCYFLEKQCLIPISPPYIQPSPKSELVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 456..818 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(612..614,657..659,699..701,711..713,765..767, 786..788,792..794) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 951..2228 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1362..1364,1374..1376,1410..1421,1428..1430, 1452..1454,1461..1463,1473..1475,1485..1487) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1566..1568,1572..1574,1782..1784,2196..2198) /gene="AGO3" /note="active site" /db_xref="CDD:240015" polyA_site 2854 /gene="AGO3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tgagatcatgacctgtaaccaactgagccatccaggcaccacaaagtaggaaaacttctttaggaatagtatttagagtaaaaaccggaatgaggataaacccatggcaaatactagtatttaagggaggaagaaagaccagttagcaaattaatgattatcgcagcagtatgagagcccaaaaatggtgtcaaggaagccaagggaggaaacatattcaaagagtggatgatttcacagttaagcagtgggagcttttccaataaaaccaagagtaaaacaaggatgtcaggactatgatatttagatatattgtgtttgccaacttctgttcttcttacaggtttcagtctacatgttacttccttgagaagcaatgtttgatacccatctctcccccctacatccagccatcccccaagtctgaattagtttctgccactgccttctacaaagcacaacctgtaattcaattcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccactagaagtctgtaatatcgtggccgggcaacgatgtatcaagaagctaacggacaatcagacttccactatgatcaaagcaacagcaagatctgcgccagatagacaagaggagattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcagtttaaagttcgggatgaaatggcccatgtaaccggacgtgtactcccagcacctatgctgcagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgagggaaacagttccatacaggagttgaaataaaaatgtgggctatagcttgtttcgccacacagaggcagtgcagagaagaaatcttgaagggtttcacggaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcggacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgtaggagatacacttttgggtatggctacgcagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaacccgtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcttccatggttcgagaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggaaaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattgttttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggacgataactgctttactgcagatgaacttcagctgctgacttaccagctctgccacacttacgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcgttcagagccagataccatctcgtggacaaagaacatgacagtgctgaaggaagtcatgtttcaggacagagcaatggacgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaattgaaagatgcatcgacatagagcgtatgtttccagtggagtcagttgagtgggaatgcctccagccatacagcaaccaacactgtgtggggaccagggtctgatttttatgttaatataaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaagtacagaaaaagtaaatgacggtttaaaaaaaaaacacacacaccttacatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttgtgaaaggtatctgtgtatattttaaatatatacatgtatacttca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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