2024-04-26 08:20:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045476702 6685 bp mRNA linear MAM 17-DEC-2021 DEFINITION PREDICTED: Leopardus geoffroyi argonaute RISC component 4 (AGO4), mRNA. ACCESSION XM_045476702 VERSION XM_045476702.1 DBLINK BioProject: PRJNA786922 KEYWORDS RefSeq. SOURCE Leopardus geoffroyi (Geoffroy's cat) ORGANISM Leopardus geoffroyi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Leopardus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059328) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Leopardus geoffroyi Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6685 /organism="Leopardus geoffroyi" /mol_type="mRNA" /isolate="Oge1" /db_xref="taxon:46844" /chromosome="C1" /sex="male" /cell_type="Fibroblast" /tissue_type="Fibroblast" /dev_stage="adult" gene 1..6685 /gene="AGO4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns" /db_xref="GeneID:123597599" CDS 315..2900 /gene="AGO4" /codon_start=1 /product="protein argonaute-4" /protein_id="XP_045332658.1" /db_xref="GeneID:123597599" /translation="
MEALGPGPPSSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 390..779 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 810..962 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 963..1325 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1119..1121,1164..1166,1206..1208,1218..1220, 1272..1274,1293..1295,1299..1301) /gene="AGO4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1464..2771 /gene="AGO4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1875..1877,1887..1889,1923..1934,1941..1943, 1965..1967,1974..1976,1986..1988,1998..2000) /gene="AGO4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2079..2081,2085..2087,2325..2327,2739..2741) /gene="AGO4" /note="active site" /db_xref="CDD:240015" polyA_site 6685 /gene="AGO4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cgcgcgccccgcgccccctccccgtccggcgggcgcgcgcgctggctcccgctcccgctcccgctggcagcggcggcggcggcggggattgtttttgttgtcgctgaggccggaagagccgcgggagccgggtccctgtccccgggccgggcgccgccgccgccccctgcccagcgcccgcgcctccgcggcgcccccccagcgccaatattccggagatcaagcgttacgcggcggcggcggcggcggcggcggcggcggggcccggagcgggaggcgccggggaccggggcgaggcggcccccgccgccgccatggaggcgctgggacctggacctccatccagcctgtttcagccacctcgtcgtcctggccttggaactgttgggaaaccaattcgactgttagccaatcattttcaggttcagattcctaaaatagatgtgtatcactatgatgtggatattaaaccagaaaaacggcctcgtagagtcaacagagaggtagtagacacaatggtacggcacttcaagatgcaaatatttggtgatcggcagcctggctatgatggcaaaagaaatatgtacacggcacacccactgccaattggacgggatagggttgatatggaagtgacacttccaggtgagggtaaagaccaaacctttaaagtgtctgttcaatgggtatcagttgtgagccttcagttgcttttagaagctttggctgggcacttgaacgaagtcccagatgactcagtacaagcacttgatgttattacaaggcaccttccctccatgaggtacactccagtgggtcgttcttttttctcacctcctgaaggttattaccaccctctgggagggggcagagaggtttggtttggctttcaccagtctgtgagacccgctatgtggaatatgatgctcaatattgatgtatctgcaactgctttctaccgggctcagcctatcattgagttcatgtgtgaggttttagacattcagaacatcaatgaacagaccaaacctctaacagattcccagcgtgtcaagtttaccaaagaaatcagaggtcttaaagttgaggtgacccactgtggacagatgaaacgaaaataccgagtttgtaatgtgactagacggccagctagtcatcaaacttttcctttacagctagaaaatggtcaagctatggaatgtacagtagcccagtattttaagcagaagtatagtctgcagctgaaatatccccacctcccctgcctccaagtgggacaagaacaaaaacatacatacttgccacttgaggtctgcaatattgtggcaggacagcgatgtataaagaagctcacggacaatcagacttccacaatgatcaaagcgacagcaagatctgcacctgacagacaggaagaaatcagtagactggtgaagagtaacagtatggtgggtggaccggatccataccttaaagaatttggcattgttgtccacaatgaaatgacagagctcacaggcagggtacttccagcaccaatgctgcagtatggaggccggaataaaacggtagccacacccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagttgcttgttttgcgcctcagaaacaatgtagggaagatttactaaagagtttcactgaccagctccgtaaaatctctaaggatgcagggatgcccatccagggccagccatgtttctgcaagtacgcacagggtgcggacagcgtggagcccatgtttaaacacctgaaaatgacatatgtgggcctacagctcatagtggttatcttgcctgggaagacaccagtgtatgcggaggtgaaacgtgttggagatacccttctgggtatggccacacagtgtgtccaggtaaaaaatgtggtgaagacctcaccccaaaccctttccaacctttgcctgaagataaatgcaaagcttggaggaattaacaatgtgcttgtacctcatcaaaggccctcggtgttccagcagcctgtcatcttcctgggagccgatgtcacgcaccccccagcaggggatgggaagaagccttccattgctgctgtcgttggcagtatggatgggcaccccagccggtactgtgccaccgttcgggtgcagacctcccgccaggagatctcccaggagctcctctatagtcaggaggtaattcaggaccttactaacatggttcgagagctgctgatccagttctacaaatccacacgcttcaaacccactcggatcatctattaccgtggaggggtatccgagggacaaatgaaacaggtagcttggccagagctaatagcaattcggaaggcatgtattagcttggaagaagattatcggccaggaataacctatattgtggtgcagaaaagacatcacacacgactcttctgtgcagataaaacagaaagggtggggaaaagtggcaatgtaccagcaggcactacagtggatagcaccatcacacatccatctgagtttgacttttacctctgtagtcatgcaggaattcagggaaccagccgtccttcccattaccaggtcttatgggatgacaactgcttcaccgcagatgagctccaactactaacttaccagctatgtcacacctatgtgcgatgcacacgctccgtctccattccagctcccgcatattatgcccggcttgtagcattccgggcaaggtatcatctggtggataaggatcatgacagcgcggaaggcagtcatgtgtcaggacagagcaatggccgggatcctcaggccttggccaaggctgtgcagattcaccacgatacccagcacacaatgtattttgcctgagagtctcagaaaaagaactcaatcaatttgacaccccatgcagcctcaaaatgtttcaaatgcctaccgcctctagagagagccaagttgacttcaggtggtctaccagcagctcggaatagttgcactgaatctatacttcgcagcactgtctgatgcatcaacaaaattgagccattttttaaaagtaatagatactcctagattgtcttctctgatgcactggactgaatttttacctcatcatgcaaaggctgatcagcctgaacttccttaaggactttacaagaaaaggtttctatggaatattttgctagctgtggtgttccccgcatccctctagtcttctaagagacgattattccttgttttctgtattcattgagtggggtgtatgcgtaagtgggagagaaaaaccaaacaatctacttcagttcagcgtaactgttttaattgtgggggtccatagactttttaatggagatttctgacttcgccactataaatgcctttaacgagcattaacttttgaaagttttacagagttttgttagttttcctactttatcttcttgatctctacagacttgtgctgtgcaaatacaggctgccaggtgattgcactatgtttggctgcagatgcagaacaggcagctctcttatttggttggcttttgtgaatgtgtaacacaaacagatgtaatgcatgtcacggtgacagataacactgccatggtaagagtactcctgtttcccccctctttgaaaaaaaaaaaaaattagcttttagtatttttcaaagttttcaaaagtgcccattttatgctgctgtgtggtttgttagatctaaatgatttttaaacttttctcacagaaaattaactttggcaataaacattttttaaggtcccttttcttcctccccctgacaacgtagttttctagatgagatttcggtatgattttatcagctatttcttataggtcataatctggcaacttctgaaactggtcagacaagacatatatttccatggctttttaaagaattatttttatctgttttatagtcacagttggtgtcctgtcactttgttttaaaataagctagaaccaggacgcttccttatcggataggctttgccagtccttaaggtacattgagcgatgctgcaacttgcacagatgtaccagcatttaaaactgtttttcccgggaatcaaggttactcacacaattatgtgcagtgcaaatttttttgcttctctttcaacctgaaatgtatttggtagggtttccctcctttcactaaactaaaactgcatttatagaagaaaaggttgacttttcttaacagagtctagattccgatcacaaggagatgggttactttcttggtccagacaaagggagctgatctaaagcaagcatcagtgaacgtgtaggggaaaggaaagtgtattttgtatttagtgtagataacactttgtgaatggacaacagttacatagagtcttggtagttccagccagtgtttcccagcccaaattttactgacttgtgattctctctccgggaacctcagaagtgaaagctggagaaggggataaaagccctagaaccacactccatatggctgaggcaggtgctgggggaagagacagacacaatgtggtaaaacgattttgccacctctgtctggaaactgctggtggggaaacactggatctgatggtgaagggtgtttgcttgaactcattagccggtccaaatctcttaaactagccttctcaaaatcccagcaatacaaagcactgtttttcttcagtcttttaaagaagcttgtaaatacattgaagtttacatttccatgtgctgttgatcggtggcgccaccagtgtttgctaagactggtctctgagagttttataacgtatactgagtcctgtagctcattaagaggactgcagacatcctcattctctgcatatagtgggatgaaagcaagctctgtaactgaggcacaacataggcaggagcgaagagatggcagatgttaatttcttaagattttccttttctgcaaatacctcacttggatactacaaatcaggacatgttggtgaggggctggctgctgcttttattcacacttgttcagggagagctcagaaaaataaatacccttcagcatggctaccctggacccaagaggaggaaaaacagaaacttctttaggagaaggaggacttactggcgtccaggatgtgaaggactcttggtggctggctggctggccagcaggcaccacacctgcacttgagtgcctccggcttgcttgttaataatgcacagaagaagtgtcacttctcaccatctcctgcacgtatggagcagggagcgaggcggaatgccgggaagccctgatttacttgccggcagtcaggctgtatgcttgaccttgaactatacagtttgtacaacctcagtcagtcctatacactggggcaaatcagtgtggtggtggaggaaaagccgggaggcctatttttataggaaacagtacctttaagggggcaaatgctgtagttttggatgaaaggaaagaaatatggaagaactaggataattggaaaaaacttgctggcgggggtgggggggggggacggtgaatctttaagaggtaaccgctgcagaatcagagttgcagcaatactgttgcaagcaagtctaaatacatagtttcaatttggcttgacaatttgaatatgataacccctttggactgactgaatcgttatgcatgtgtcaatcaatgggaggtgtgcattctctagaagtagatttactgtttggttttttaaaatgcagcctgtttaggcactgtcatgtggtgtgaaagattgaaatgtagcaatgctaaagagtaacaattaggggataaggcacggggatattaagagaatggtgaagatccaaatgttgaaccgattatgttttgttgttattgttgttcgctgttgaaccctgagtggttgataaggtgaactagtggcttaatgcagccagcagtctgggcaggcagaacatattcattcttactgtaaattctatttgctgcttccaaaggtgatgatttataagcagacatgttctatatggtctgtattttaggatctggcacccagactatatcagagcttatctacctggctcagctatctacccttcctgtgggaaaaggcaatccactgtctaagaaggctcactctcttctgccctgccctagcaaccctttgtggatgtgctgtaagattttcttgctcaatagcaaggtggtagctctgctttcattttaagaaagtagaggctgagggcattgtgtcaatactgcttcaactccaaggatttttccttgtaaaattaaagggaagatcttgttattgattaaccattttcttatcccttgctattgacattcatgctctttctatgtctggtggctaaaaatgtttgcatttgttcatttgactaatggtgtaattttggtttctatattgttagacctgtaatgttttaaaatgtattttattaactctggactggatgtatgtctctagcaatacgaggtactttctaaactattaagggaggggtggtatccccatgttaagacaagatgatggttgtttaaattttgcatttttttttttttttggcctgcagggatattttgtgttcatgtgtccaaaagagaataaattggcattcttgtgccaaaagtt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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