LOCUS       XM_045463405            2569 bp    mRNA    linear   MAM 17-DEC-2021
DEFINITION  PREDICTED: Leopardus geoffroyi vimentin (VIM), mRNA.
ACCESSION   XM_045463405
VERSION     XM_045463405.1
DBLINK      BioProject: PRJNA786922
KEYWORDS    RefSeq.
SOURCE      Leopardus geoffroyi (Geoffroy's cat)
  ORGANISM  Leopardus geoffroyi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
            Felinae; Leopardus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_059341) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Leopardus geoffroyi Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Leopardus geoffroyi"
                     /mol_type="mRNA"
                     /isolate="Oge1"
                     /db_xref="taxon:46844"
                     /chromosome="B4"
                     /sex="male"
                     /cell_type="Fibroblast"
                     /tissue_type="Fibroblast"
                     /dev_stage="adult"
     gene            1..2569
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16925 long SRA reads, 35 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 76 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:123590343"
     CDS             841..2241
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_045319361.1"
                     /db_xref="GeneID:123590343"
                     /translation="

MSTRSVSSSSYRRMFGGPGTGSRPSSSRSYVTTSTRTYTLGSALRPSTSRSLYASSPGGSYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     misc_feature    880..1143
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    1144..2070
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
     polyA_site      2569
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ttcctcggccgcagcctcgaagctcgcgccgtccaaagccacaccgagcccgttaggtccctgaacctaaggaacccccaagacaagaggctggaaagattcgtgggccaaagcgggcggtgcgccaagcctgctcgggaccccagctccgtgtcctaggctgtgcgcgcccccaacgcccgctccaatctcaggcgttctttgttcctttctccgcgcctcccaagcctcgggatccccccctcttcctgcccctttgcccgcgggtctccccacccaccagccccgagcagaacactggcctgcagcggagcgcccctcccacccgcccgcctcctcccaggcctctgtggcccagtgcctggggacccctccggtctggtcctgggcagggttccctaccaccgcgcgaccccgcctttttcagcacccactgggagcagcgctcaggccaacatcaggaaagcccccgaaagtcccagcccacccaaaaagtaacgggaaggtgcccagtcccgggctgcagaggggcggagaggaaggctcgagggcgcccccgccccaacccccgcccacccttcccgcatctcgtcgggtccccattggctggcgctctccgcggctgggatggcagtgggaggggaccctctttcctaaccgggttataaaaactgcgccctcggcccggtccggtcctctgccactctcgctccgggatcccccgcgccagagacgcagcagcgctcccaccgcccacacccaccgcgccctcgctcgcctgtcctccccgagccagtccgcgccgccgcagccgcccagcccaccgccaccgtctcagccatgtccaccaggtctgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccgggagccggccgagctccagccggagctacgtgaccacgtccacccgcacctacaccctgggcagcgcgttgcgccccagcaccagccgcagcctctacgcctcgtccccgggcggctcgtacgccacgcgctcctcggcggtgcgcctgcggagcagtgtgcccggtgtgcgtctgctgcaggactcggtggacttctcgctggccgatgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccgtcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctggccgaggacatcatgcggctccgggagaagttgcaggaggagatgcttcagagagaggaagccgagagcaccctgcaatctttcagacaggatgttgacaacgcttctttggcacgtcttgaccttgagcgcaaagtggaatccttgcaggaagagattgcctttttgaagaaactacatgatgaggaaatccaggagctacaggctcagatccaggaccagcacgtccaaatcgacgtggatgtttccaagcctgacctcaccgccgccctgcgagatgtacgccagcaatatgaaagcgtggctgccaagaaccttcaggaggccgaagaatggtacaagtccaagtttgctgacctctctgaggctgctaaccggaacaatgatgccctgcgccaggcgaagcaggaatcaaatgagtaccggagacaggtccagtccctcacctgcgaagtggacgccctcaaagggactaacgagtctctggaacgccagatgcgtgaaatggaagagaactttgccgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaggaaatggctcgtcaccttcgcgaataccaagacctgctgaatgttaagatggctcttgacattgagatcgccacctacaggaagctgctggaaggcgaggagagcaggattgctctgcctcttcccaacttttcttccctgaacctgagggaaaccaatctggattcacttcctctggttgacactcactcaaaaagaacacttctgattaagacggtcgaaaccagagatggacaggttatcaatgaaacttctcagcatcacgatgaccttgagtgaagattgcacagactcggtgcagcaatatattaccagcaagaataaaataaaaaaaaaagaaatccatatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataacctttagttcttaagaaccaacactcttaaaagatttagagaaaagtttacaaacataatctagtttacgaagaaaacttgtgctaggatactttttaaaaagtatttttgaataccattaaaactgcttttttccaacaagtgtctgaccaacttgtttctgcttcaataaatctttggaaaactc

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