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2024-03-29 11:20:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_045453557           14457 bp    mRNA    linear   MAM 17-DEC-2021
DEFINITION  PREDICTED: Leopardus geoffroyi argonaute RISC catalytic component 2
            (AGO2), transcript variant X3, mRNA.
ACCESSION   XM_045453557
VERSION     XM_045453557.1
DBLINK      BioProject: PRJNA786922
KEYWORDS    RefSeq.
SOURCE      Leopardus geoffroyi (Geoffroy's cat)
  ORGANISM  Leopardus geoffroyi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
            Felinae; Leopardus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_059338) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Leopardus geoffroyi Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14457
                     /organism="Leopardus geoffroyi"
                     /mol_type="mRNA"
                     /isolate="Oge1"
                     /db_xref="taxon:46844"
                     /chromosome="C3"
                     /sex="male"
                     /cell_type="Fibroblast"
                     /tissue_type="Fibroblast"
                     /dev_stage="adult"
     gene            1..14457
                     /gene="AGO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 92 long SRA reads, 4 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:123585406"
     CDS             202..2550
                     /gene="AGO2"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X3"
                     /protein_id="XP_045309513.1"
                     /db_xref="GeneID:123585406"
                     /translation="
MVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLATMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
     misc_feature    244..468
                     /gene="AGO2"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    496..648
                     /gene="AGO2"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    649..1011
                     /gene="AGO2"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(805..807,850..852,892..894,904..906,958..960,
                     979..981,985..987)
                     /gene="AGO2"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1144..2421
                     /gene="AGO2"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1555..1557,1567..1569,1603..1614,1621..1623,
                     1645..1647,1654..1656,1666..1668,1678..1680)
                     /gene="AGO2"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1759..1761,1765..1767,1975..1977,2389..2391)
                     /gene="AGO2"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      14457
                     /gene="AGO2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
cgcctccgcccgccgccccggccgcgtcgggtaaacctgtttggcgaggcggccgcgccggggcggatcgtgcggccggcggctccctcgcggctcgcggcgtcggggcccgtggcgcgcgcgcggccgcccctcggccccggagcccctcggcggcgccaccatgtactcgggagccggccccgggaaatagtggaacatatggtccagcactttaaaacacagatctttggggatcggaaaccagtgtttgatggaagaaagaatctctacacagcgatgcccctcccaatcgggagggataaggtggagctggaggtcacactgccaggagaagggaaagaccgcatcttcaaggtgtccatcaagtgggtgtcctgtgtgagcttacaggcgttacacgatgcactttcggggcggctgcccagcgtcccctttgagacgatccaggccctggacgtggtcatgcggcatttgccatccatgaggtacacccccgtgggccgctccttcttcacggcgtccgagggctgctccaaccccctcggggggggccgggaagtgtggtttggcttccatcagtccgtccgaccttctctttggaaaatgatgttaaacattgatgtctcagcaactgcgttttataaggcacagccagtaatcgagtttgtttgtgaagttttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaatcaaaggtctgaaggtggagatcacgcactgtgggcagatgaagaggaagtaccgtgtctgcaacgtgacccggcggcccgccagccaccaaacattcccgcttcagcaggagagcgggcagacggtggagtgcacggtggcccagtacttcaaggacaggcacaagctggttctgcgctacccccacctgccatgtttacaagtcggacaggagcagaaacacacctaccttcccctcgaggtctgtaacatagtagcaggacagagatgtatcaaaaagctgaccgacaatcagacctcaaccatgatcagagcgactgccaggtcggcgcccgatcggcaagaagagattagcaagctgatgcgaagcgcaagttttaatacagatccgtatgttcgtgaatttggaatcatggtcaaagacgagatgacagatgtgaccggacgggtcctccagccgccctccatcctctacgggggcaggaataaagcgatcgccacccctgtccagggcgtctgggacatgaggaacaagcagtttcacacgggcattgagatcaaggtgtgggccatcgcgtgcttcgccccccagcgccagtgcacggaggtccacctgaaatccttcacagagcagctcagaaagatctcgagggacgctgggatgccgatccagggccagccgtgcttctgcaagtacgcccagggggcggatagcgtggagcccatgttcaggcacctgaagaacacgtacgctggccttcagctggtggtggtcatcctgcctggcaaaacccccgtttacgccgaggtcaagcgcgtgggagacacggtgctggggatggccacgcagtgtgtgcagatgaagaacgtgcagaggaccacgccccagaccctgtccaacctctgcttgaagatcaacgtcaagctgggaggcgtgaacaacatcctgctgccccaggggaggccacccgtgttccagcagcccgtcatctttctgggggccgatgtcacccacccacccgctggggacgggaagaagccttccattgccgccgtcgtgggcagcatggacgcccaccccaaccgctactgtgccaccgtgcgggttcagcagcaccggcaggagatcatccaggacctggccaccatggtccgcgagctcctcatccagttctacaagtccacgcgcttcaagccgacccgcatcatcttctaccgcgacggcgtctcagaggggcagtttcagcaggttctccaccacgagttactggccattcgcgaggcgtgtattaagctggaaaaggactaccagccagggatcacgttcatagtggtgcagaaaaggcaccacacgcggctcttctgcaccgacaagaacgagagggttgggaaaagtggaaacattccggcaggcacgactgtggacacgaaaatcacccacccgaccgagtttgacttctacctgtgtagtcacgccggcatccagggaacaagcaggccttcccactaccacgtgctttgggacgacaatcgtttctcttccgacgagctgcagatcctcacctaccagctgtgtcacacctacgtgcgctgcacgcgctccgtgtccatcccggcgccggcatactacgctcacctggtggccttccgcgccaggtaccacctggtggacaaagaacatgacagtgccgaaggaagccatacctccgggcagagtaatgggcgagaccaccaagccttggcaaaggcggtccaggttcatcaggacacgctgcgcaccatgtactttgcttgacgtgtcatagtgtttacgatggtgtacggagttggattcacatgagaccagctacactcagaccaacagatgcccagcccttccgtgacagccagcatcgaacatgagacgtcatcgattttagtagattctccatcttccagaatgccttccgtcccggatttcagacttggattttgaactgcagacctgtatgagaccccattgtcgtaggaagtatggtttgccaaaatctagaagctgcttcttaaaatagagtcccgtgtttcctaaaaatctcctaaaaccagtctatgaactcagggctttaaaacatttttaatttatttggtcattcaatttacttgtttttaatacatgattctctatgaaattgatgggctcaaactagctgtgaacgttctcagagagtggaagcaaaacacagagcacggcagtggttttaaagccttgagcgttgtgacgtggtcgctgacgtctacaccagagtgacccaatgcgctcctgacagggctcacacaagctcttcggggccgagggcaggtggcccgccgaggcgcccacgggcgtctcgctctgtcaccacccgcctctcactcagcttgaaataaggagcgggggcagaagacgggccatgtgtgtttacaacatttataggtccagagagattggcagacaagtgccattttaataaaaatttatttaaaaaaaaaaaaaaaagaaaaagacaatatgccgacagtctaatcgtaagatttgtcctataggactgtgacatttattttccaaagtttctaaagaatacgggtctgtggtgataaatacagtacaatcctttttcactgttatgtctttaatgtaagagaaaaaatatatatatctggtttgcagtattaatgtgataggtagacgctgttttttcattttattgactatggggtgcttattgtgatctgtttagcatatcaggagtgttttggagcctggagactggaccgcctcgtgtggttctcgcgcttacgtacaggagtatgcaattgactcaatgtgaccgcgacccgccttccctgcgtagattgcgtagcctgtaccttggggggcaccgagcgcgcacggcagctgctcgccgccaccccacctcccgcccccgtgtgttgctcagccggttaagcacagatggaatgtacttattcttccattcctggaacaggtccacgtgtcggagtgcacttccctctgcgtctggttctctgttagacgagtctcgtaggatctatgcactgaaacgcgcagagagccgtcggcggtggctccccgttgggcgcgaggccagcggcccgcgacggagcctgcccgcggaggtggcggacgcgggtttgccaatctagaaaccgtcacactaagcgtgataccacggacaactccggaagggtaacagcagacgattctgtgctaagtgggctgtttgtcctcgtagacagtttttaaaacaaatcaaatccacgttcagtgtagagatccggggaaggagacgagcccttctcccccccccccccccccccccagtgctgctttgtgctctgtaggtttacccctccctgccgacggccctccccggaccccctccccgacactgacctctggccctgtggtggggcgggggtcccgatgggctgcctcttgctggagacagcacccccacctccatccttgtctgctggctcggagcggggaggggcgaccgcaggcggggctgtgacggacactcggcctagattttggcggcgatgacaaaggggcgactattgtttgtgaagatatatactcagagtggtgtgtgcgtgcgtgtctgtgtgtgcatgtgggtgtcttagtaatggcgttagccttttcttgctgtatcttttttgttttgggtttttttttgttttttgggttggttggttttttttgttattttgttttttgttttcttttttttttttgttattttggtctttttaaacgaacagaagcctctgctctaagaaatgttgcaattccctgtccttttattggcaagtggcactttctcctattttcagaaggataccaatacactcttggcttaaattaccaggagcatccaagctaaggagggaatctcttcactaatacaccttcgaaatctgaaattaggttagttttcagccatgtttagggtcatctggaaccgtgtgtctcaaaggctcatttctgtgacctgccacagggtcctggcggtcagggcagtggcgggtgcttggtaaaaatgcagacccctgaatcagattctccagagctgggctgggggtctgtattttgtaccttcagccgggattccggggctgcctgaagtctgagaacccgtgatggagaactttctgaagagtaatctccctcgagcaccgagggcccagcccaggggagccctttggcagtgcaggcaggtgccttctaagctaacgcctaggaaagatcacaggctgacggaaaattagaccttttttttctttaatcatttgaaggcaaggtgttccttttcgtgggccatagtacttcgagaaaggtactttgtacagccctatgctagttttataaaacctttcatactaaaagcattaacagaccaaacgtctccagctgggttagctgcatacctttgtacacatctgatgattcagaattcaaatggctgtagttacagtttctcaggtaaataattgttttcccaaatttctaccaatcccccattattaggatcagttttgagacagcgtgaaacctcaaagtgcagtagactaagtctgagccctgttcacgtggagccaaaaggggccctcgcccgtctctgtgcttgtacccccccgcccctgggctacctcggccctcgtggccccagattcccgggggagccccgtcctccgcacgcgtgcggtcactggaggctcggggcccatgtggactcgagtggcatctgctcgctggctttgccccgccccactgttaagtaaggtgtgccttgctttaagcaaactgaatgtgaaaattatgatgtagaaatctggattcattaaagaggaaaactaggattcatctcgtctctttcaaagaggtctcccaatgagattcttaaactggtactcttcctagtggattttaaaatgttcgctttaagagaaatgactgtaccccccctcccttccccactgttctgctcgccccgctctcgccctagtgacaaagcaatgaaggaaaccccgggggagccgagggcggccgctgctttgtgcccgtgccccttggggatgctgagattccagcctgtttgtgtgctacaagctcagaattgcctagtgcggatacgttattgtaaaactgggcatacctgtacttttagaaagggactgtttggtttgggagttgagaaatcttcacacacacacttttgatacgttataggatctgcttttactttttaacgtgatgtcgctttctggtggtgttctcacactcccgtggatgaatgtttgcactctagaaccacaggcggcccctggccctcggtgggtgggggtaggggggggggggcttgcccgagagggacgtgatggcaacggagtgatttccctgctcttttgaggttggccggggtccctgctctgactgatattcaccctggctgcggggtgctcattggaaaagaccgtgtagttcagttcctgcagcggggtgcggggtagttttactgatgtcgtattatatgttatttttattgttggtaaatgcaaatgttgctatttattttttttctttctgctctggttcgatttggccgatgtggatatcccagtgcatgtggtacctgatggatatgctagcagtttctttccccaacttttataaattgcctaatgtttacctgcaagtttgccggatgattttatttttgaaagccacaaatgtaatttttctggatgaattgtttttcttatatatgcagcaatgtaattttacattgatctgcagggtgatttaaattttatttttacaaggcagtttttcagtcaaattatatatttgatacaatatgttaagggtagaccagccaagcgtcctgcagttgggacaccagactgtctctggggggcctggggggctgggacggcttctcttggttgtttggcatcatggaagcacttggcttggttcgtggagccgtcaggatctggatgtactccttcaacgggactttgatctgttggacagttaaaaggatttttcatgggcattttcctacacctaaggcagttccattaggaggagctttagaagttgacataatccagacagtggacaatcccagtggcccagacaagccatagaaatttccctgtgacctctctttgactcatctctcacgctcatgagaaaaggaatgtacaataaatagaaacttcctcagtgttcgtacgcctcactttcagaatgcaactagtttatttatattttaagcccttccccaaagtaaccaagaatcttctccctcgagctgccctgcctgcgggtttcggctgcggtgacgttctcttcagtgtggacacggtgcacgtgtgactttgtaatggggctgtctgtgttacacacacacgctgactcttttgtaaggaagattttcaactcagaataattgcactgattttttgacaacttcctttttattatgtccaactttgcatctgctgtacttgtttgaaatgattgtaaatagacgtagggccgcaaacgtgataggaacgcgacgcgtcgctttgttgtagggtactggcacgttttcagtattatgtgttagaatcgcgtggacttcactctgcctctttagccttgtgtctgctgaccattcatgaaggacaaattagcctcgttttcttgttttccagaaaggaagtttgcagtttattgaaaggagagtatgctctcccgttgaggtctgaagatttaactttaagagggttaattataaatcctttgaacgctctctttggtctaattcctggttgtttttcatggctccttaaagcattttcttccagttccatccagcatctgacagttgggatcagaagcatctgtgtggccaatgttgccagagggtgagggcctccctcactgctctttggtcagccatcattttaaagccatgagatcactgttgtgtcaaaaccgtcatttgtggcttagcccatcaatgctggagagaccagagatccagcgctgttcctttatgccttgtgacgttgctagatgagaagtatgtgctacagcccacagcccacagtgtgtaatcgtttgcggtcaggctacccagtaagacacacacggagcttctagacccaaaccagtcacgaatgtgtgtcaacgtagcgtcgatgccatcatggtgccctccgtaatgcttttttggttatgttttgccattttattgtctaaagtgaatgtattggcctagccaaatcactacagaaggtggtttctgaataccttttagtttaaaaaaaagtaaataaatgcagataaaggctacctctgaattctcagtagattcgtgtttgctcttaagcgtagctatccacactgaaaatagccaaaacgttgcctgaaaaaaccgaattgtgaacatctctctctccaattctggcttgaaaatgcgtgtgccatactgtgacccgtgggcagtcccctcctccccctcggaggtaagagaggcgggccgggactcctcggggctgcccggctccgttttaggactctaagcggccagcacgaatgaaacggaagagcctcccgcaccgtcctcccaggctggcgggagcgcctccatgcggggctgcgtgcagcgagaccctgaagccgcctgtggtcctggccttgtgcgcttccctgtttgttgtgagaaagcactctcttctctgcttcacttgtgaatgggttgaaaatggctccctctgcgctctcctccctttttatacgctctgtaaaatcacaaaggtgcttaaacaccgactcttgtgcaaaaataatccatctaaagtggctgtgtggtcgcaggagacagtgcgggtcgtgatcggcctttgatcttggaaccttgagttattgtcactccctacttaaaaatgatctacggtttaaaagcaaaatgttctgtccgagtccaaggccctttgtttgaccggacataagggcccacagccagcatcttgaagtcggagttcccagggccccctgggtcatctgacgctaactcgataactcgcaggcagtctgtcctgagagtctgtcacctactgctctgaatagccctccctgtgattaaccactttgctgccagaacgtcctttgcccacacgctgccgtgggtcagtcggggtcgccctctgccctcttcacctcttgtctttaggctcgttaggttctctcatctttggaaggtccgcatttgctgcaagacccctccgttggtttgctcttaaattcttgagggacaggcgggcggttttgcgggaacggacgtctgggggcgtggaggttgctctgctcgctcaccggacgctcatcagatgctgactttggtgcagagaggttacgcgcgtaacatgacctggcagtttttgcctttagcactgtcgttttgggttttgatgcttttctcgctgcgcggcgtgctttaatcctgaaagagctaagtgtcctttgcggtctttctacgaatgttttgtaatggcgcgactacactgttttgtagacacagccctccccaagatgcgtgggcgctcagcacgggcaccctcagtgtctgctgacctgctgcttctggaactgctcaggcgctctgggttggccttctcttcgaccagaatcccattcagggcattttcaggggacaccgcatggcagcccactctgattcagtaatgtgaactgttgaactcagatctgcccatgagctctgtgcataaatgtctccagaatcccggggtgggcctctcccgccattttcacgttcatgaaaaattattttaaaagagggagctgaagactactggtgcttttgttaacacttttctcttactggttgatgtgaaagagttaaagctaaaacaccaaatattaactcttcctcctcaagtgtctccaggaactagatgttgaggccaccctcgttaagcaccttctgaatcaaggtccttcaacccgtgagttgatcccaagaccagcctacaccatgaggccaggggtgcggtgcaggccaactgcgtggccccttggcaccacttggcagacctcggtgcttgtgttggggagccgaggctcctttgaactctagagactttggggacaatctgggggggggcgggcgcgggagagggca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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]