2024-03-29 11:20:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045453557 14457 bp mRNA linear MAM 17-DEC-2021 DEFINITION PREDICTED: Leopardus geoffroyi argonaute RISC catalytic component 2 (AGO2), transcript variant X3, mRNA. ACCESSION XM_045453557 VERSION XM_045453557.1 DBLINK BioProject: PRJNA786922 KEYWORDS RefSeq. SOURCE Leopardus geoffroyi (Geoffroy's cat) ORGANISM Leopardus geoffroyi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Leopardus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059338) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Leopardus geoffroyi Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..14457 /organism="Leopardus geoffroyi" /mol_type="mRNA" /isolate="Oge1" /db_xref="taxon:46844" /chromosome="C3" /sex="male" /cell_type="Fibroblast" /tissue_type="Fibroblast" /dev_stage="adult" gene 1..14457 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92 long SRA reads, 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:123585406" CDS 202..2550 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X3" /protein_id="XP_045309513.1" /db_xref="GeneID:123585406" /translation="
MVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLATMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 244..468 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 496..648 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 649..1011 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(805..807,850..852,892..894,904..906,958..960, 979..981,985..987) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1144..2421 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1555..1557,1567..1569,1603..1614,1621..1623, 1645..1647,1654..1656,1666..1668,1678..1680) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1759..1761,1765..1767,1975..1977,2389..2391) /gene="AGO2" /note="active site" /db_xref="CDD:240015" polyA_site 14457 /gene="AGO2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cgcctccgcccgccgccccggccgcgtcgggtaaacctgtttggcgaggcggccgcgccggggcggatcgtgcggccggcggctccctcgcggctcgcggcgtcggggcccgtggcgcgcgcgcggccgcccctcggccccggagcccctcggcggcgccaccatgtactcgggagccggccccgggaaatagtggaacatatggtccagcactttaaaacacagatctttggggatcggaaaccagtgtttgatggaagaaagaatctctacacagcgatgcccctcccaatcgggagggataaggtggagctggaggtcacactgccaggagaagggaaagaccgcatcttcaaggtgtccatcaagtgggtgtcctgtgtgagcttacaggcgttacacgatgcactttcggggcggctgcccagcgtcccctttgagacgatccaggccctggacgtggtcatgcggcatttgccatccatgaggtacacccccgtgggccgctccttcttcacggcgtccgagggctgctccaaccccctcggggggggccgggaagtgtggtttggcttccatcagtccgtccgaccttctctttggaaaatgatgttaaacattgatgtctcagcaactgcgttttataaggcacagccagtaatcgagtttgtttgtgaagttttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaatcaaaggtctgaaggtggagatcacgcactgtgggcagatgaagaggaagtaccgtgtctgcaacgtgacccggcggcccgccagccaccaaacattcccgcttcagcaggagagcgggcagacggtggagtgcacggtggcccagtacttcaaggacaggcacaagctggttctgcgctacccccacctgccatgtttacaagtcggacaggagcagaaacacacctaccttcccctcgaggtctgtaacatagtagcaggacagagatgtatcaaaaagctgaccgacaatcagacctcaaccatgatcagagcgactgccaggtcggcgcccgatcggcaagaagagattagcaagctgatgcgaagcgcaagttttaatacagatccgtatgttcgtgaatttggaatcatggtcaaagacgagatgacagatgtgaccggacgggtcctccagccgccctccatcctctacgggggcaggaataaagcgatcgccacccctgtccagggcgtctgggacatgaggaacaagcagtttcacacgggcattgagatcaaggtgtgggccatcgcgtgcttcgccccccagcgccagtgcacggaggtccacctgaaatccttcacagagcagctcagaaagatctcgagggacgctgggatgccgatccagggccagccgtgcttctgcaagtacgcccagggggcggatagcgtggagcccatgttcaggcacctgaagaacacgtacgctggccttcagctggtggtggtcatcctgcctggcaaaacccccgtttacgccgaggtcaagcgcgtgggagacacggtgctggggatggccacgcagtgtgtgcagatgaagaacgtgcagaggaccacgccccagaccctgtccaacctctgcttgaagatcaacgtcaagctgggaggcgtgaacaacatcctgctgccccaggggaggccacccgtgttccagcagcccgtcatctttctgggggccgatgtcacccacccacccgctggggacgggaagaagccttccattgccgccgtcgtgggcagcatggacgcccaccccaaccgctactgtgccaccgtgcgggttcagcagcaccggcaggagatcatccaggacctggccaccatggtccgcgagctcctcatccagttctacaagtccacgcgcttcaagccgacccgcatcatcttctaccgcgacggcgtctcagaggggcagtttcagcaggttctccaccacgagttactggccattcgcgaggcgtgtattaagctggaaaaggactaccagccagggatcacgttcatagtggtgcagaaaaggcaccacacgcggctcttctgcaccgacaagaacgagagggttgggaaaagtggaaacattccggcaggcacgactgtggacacgaaaatcacccacccgaccgagtttgacttctacctgtgtagtcacgccggcatccagggaacaagcaggccttcccactaccacgtgctttgggacgacaatcgtttctcttccgacgagctgcagatcctcacctaccagctgtgtcacacctacgtgcgctgcacgcgctccgtgtccatcccggcgccggcatactacgctcacctggtggccttccgcgccaggtaccacctggtggacaaagaacatgacagtgccgaaggaagccatacctccgggcagagtaatgggcgagaccaccaagccttggcaaaggcggtccaggttcatcaggacacgctgcgcaccatgtactttgcttgacgtgtcatagtgtttacgatggtgtacggagttggattcacatgagaccagctacactcagaccaacagatgcccagcccttccgtgacagccagcatcgaacatgagacgtcatcgattttagtagattctccatcttccagaatgccttccgtcccggatttcagacttggattttgaactgcagacctgtatgagaccccattgtcgtaggaagtatggtttgccaaaatctagaagctgcttcttaaaatagagtcccgtgtttcctaaaaatctcctaaaaccagtctatgaactcagggctttaaaacatttttaatttatttggtcattcaatttacttgtttttaatacatgattctctatgaaattgatgggctcaaactagctgtgaacgttctcagagagtggaagcaaaacacagagcacggcagtggttttaaagccttgagcgttgtgacgtggtcgctgacgtctacaccagagtgacccaatgcgctcctgacagggctcacacaagctcttcggggccgagggcaggtggcccgccgaggcgcccacgggcgtctcgctctgtcaccacccgcctctcactcagcttgaaataaggagcgggggcagaagacgggccatgtgtgtttacaacatttataggtccagagagattggcagacaagtgccattttaataaaaatttatttaaaaaaaaaaaaaaaagaaaaagacaatatgccgacagtctaatcgtaagatttgtcctataggactgtgacatttattttccaaagtttctaaagaatacgggtctgtggtgataaatacagtacaatcctttttcactgttatgtctttaatgtaagagaaaaaatatatatatctggtttgcagtattaatgtgataggtagacgctgttttttcattttattgactatggggtgcttattgtgatctgtttagcatatcaggagtgttttggagcctggagactggaccgcctcgtgtggttctcgcgcttacgtacaggagtatgcaattgactcaatgtgaccgcgacccgccttccctgcgtagattgcgtagcctgtaccttggggggcaccgagcgcgcacggcagctgctcgccgccaccccacctcccgcccccgtgtgttgctcagccggttaagcacagatggaatgtacttattcttccattcctggaacaggtccacgtgtcggagtgcacttccctctgcgtctggttctctgttagacgagtctcgtaggatctatgcactgaaacgcgcagagagccgtcggcggtggctccccgttgggcgcgaggccagcggcccgcgacggagcctgcccgcggaggtggcggacgcgggtttgccaatctagaaaccgtcacactaagcgtgataccacggacaactccggaagggtaacagcagacgattctgtgctaagtgggctgtttgtcctcgtagacagtttttaaaacaaatcaaatccacgttcagtgtagagatccggggaaggagacgagcccttctcccccccccccccccccccccagtgctgctttgtgctctgtaggtttacccctccctgccgacggccctccccggaccccctccccgacactgacctctggccctgtggtggggcgggggtcccgatgggctgcctcttgctggagacagcacccccacctccatccttgtctgctggctcggagcggggaggggcgaccgcaggcggggctgtgacggacactcggcctagattttggcggcgatgacaaaggggcgactattgtttgtgaagatatatactcagagtggtgtgtgcgtgcgtgtctgtgtgtgcatgtgggtgtcttagtaatggcgttagccttttcttgctgtatcttttttgttttgggtttttttttgttttttgggttggttggttttttttgttattttgttttttgttttcttttttttttttgttattttggtctttttaaacgaacagaagcctctgctctaagaaatgttgcaattccctgtccttttattggcaagtggcactttctcctattttcagaaggataccaatacactcttggcttaaattaccaggagcatccaagctaaggagggaatctcttcactaatacaccttcgaaatctgaaattaggttagttttcagccatgtttagggtcatctggaaccgtgtgtctcaaaggctcatttctgtgacctgccacagggtcctggcggtcagggcagtggcgggtgcttggtaaaaatgcagacccctgaatcagattctccagagctgggctgggggtctgtattttgtaccttcagccgggattccggggctgcctgaagtctgagaacccgtgatggagaactttctgaagagtaatctccctcgagcaccgagggcccagcccaggggagccctttggcagtgcaggcaggtgccttctaagctaacgcctaggaaagatcacaggctgacggaaaattagaccttttttttctttaatcatttgaaggcaaggtgttccttttcgtgggccatagtacttcgagaaaggtactttgtacagccctatgctagttttataaaacctttcatactaaaagcattaacagaccaaacgtctccagctgggttagctgcatacctttgtacacatctgatgattcagaattcaaatggctgtagttacagtttctcaggtaaataattgttttcccaaatttctaccaatcccccattattaggatcagttttgagacagcgtgaaacctcaaagtgcagtagactaagtctgagccctgttcacgtggagccaaaaggggccctcgcccgtctctgtgcttgtacccccccgcccctgggctacctcggccctcgtggccccagattcccgggggagccccgtcctccgcacgcgtgcggtcactggaggctcggggcccatgtggactcgagtggcatctgctcgctggctttgccccgccccactgttaagtaaggtgtgccttgctttaagcaaactgaatgtgaaaattatgatgtagaaatctggattcattaaagaggaaaactaggattcatctcgtctctttcaaagaggtctcccaatgagattcttaaactggtactcttcctagtggattttaaaatgttcgctttaagagaaatgactgtaccccccctcccttccccactgttctgctcgccccgctctcgccctagtgacaaagcaatgaaggaaaccccgggggagccgagggcggccgctgctttgtgcccgtgccccttggggatgctgagattccagcctgtttgtgtgctacaagctcagaattgcctagtgcggatacgttattgtaaaactgggcatacctgtacttttagaaagggactgtttggtttgggagttgagaaatcttcacacacacacttttgatacgttataggatctgcttttactttttaacgtgatgtcgctttctggtggtgttctcacactcccgtggatgaatgtttgcactctagaaccacaggcggcccctggccctcggtgggtgggggtaggggggggggggcttgcccgagagggacgtgatggcaacggagtgatttccctgctcttttgaggttggccggggtccctgctctgactgatattcaccctggctgcggggtgctcattggaaaagaccgtgtagttcagttcctgcagcggggtgcggggtagttttactgatgtcgtattatatgttatttttattgttggtaaatgcaaatgttgctatttattttttttctttctgctctggttcgatttggccgatgtggatatcccagtgcatgtggtacctgatggatatgctagcagtttctttccccaacttttataaattgcctaatgtttacctgcaagtttgccggatgattttatttttgaaagccacaaatgtaatttttctggatgaattgtttttcttatatatgcagcaatgtaattttacattgatctgcagggtgatttaaattttatttttacaaggcagtttttcagtcaaattatatatttgatacaatatgttaagggtagaccagccaagcgtcctgcagttgggacaccagactgtctctggggggcctggggggctgggacggcttctcttggttgtttggcatcatggaagcacttggcttggttcgtggagccgtcaggatctggatgtactccttcaacgggactttgatctgttggacagttaaaaggatttttcatgggcattttcctacacctaaggcagttccattaggaggagctttagaagttgacataatccagacagtggacaatcccagtggcccagacaagccatagaaatttccctgtgacctctctttgactcatctctcacgctcatgagaaaaggaatgtacaataaatagaaacttcctcagtgttcgtacgcctcactttcagaatgcaactagtttatttatattttaagcccttccccaaagtaaccaagaatcttctccctcgagctgccctgcctgcgggtttcggctgcggtgacgttctcttcagtgtggacacggtgcacgtgtgactttgtaatggggctgtctgtgttacacacacacgctgactcttttgtaaggaagattttcaactcagaataattgcactgattttttgacaacttcctttttattatgtccaactttgcatctgctgtacttgtttgaaatgattgtaaatagacgtagggccgcaaacgtgataggaacgcgacgcgtcgctttgttgtagggtactggcacgttttcagtattatgtgttagaatcgcgtggacttcactctgcctctttagccttgtgtctgctgaccattcatgaaggacaaattagcctcgttttcttgttttccagaaaggaagtttgcagtttattgaaaggagagtatgctctcccgttgaggtctgaagatttaactttaagagggttaattataaatcctttgaacgctctctttggtctaattcctggttgtttttcatggctccttaaagcattttcttccagttccatccagcatctgacagttgggatcagaagcatctgtgtggccaatgttgccagagggtgagggcctccctcactgctctttggtcagccatcattttaaagccatgagatcactgttgtgtcaaaaccgtcatttgtggcttagcccatcaatgctggagagaccagagatccagcgctgttcctttatgccttgtgacgttgctagatgagaagtatgtgctacagcccacagcccacagtgtgtaatcgtttgcggtcaggctacccagtaagacacacacggagcttctagacccaaaccagtcacgaatgtgtgtcaacgtagcgtcgatgccatcatggtgccctccgtaatgcttttttggttatgttttgccattttattgtctaaagtgaatgtattggcctagccaaatcactacagaaggtggtttctgaataccttttagtttaaaaaaaagtaaataaatgcagataaaggctacctctgaattctcagtagattcgtgtttgctcttaagcgtagctatccacactgaaaatagccaaaacgttgcctgaaaaaaccgaattgtgaacatctctctctccaattctggcttgaaaatgcgtgtgccatactgtgacccgtgggcagtcccctcctccccctcggaggtaagagaggcgggccgggactcctcggggctgcccggctccgttttaggactctaagcggccagcacgaatgaaacggaagagcctcccgcaccgtcctcccaggctggcgggagcgcctccatgcggggctgcgtgcagcgagaccctgaagccgcctgtggtcctggccttgtgcgcttccctgtttgttgtgagaaagcactctcttctctgcttcacttgtgaatgggttgaaaatggctccctctgcgctctcctccctttttatacgctctgtaaaatcacaaaggtgcttaaacaccgactcttgtgcaaaaataatccatctaaagtggctgtgtggtcgcaggagacagtgcgggtcgtgatcggcctttgatcttggaaccttgagttattgtcactccctacttaaaaatgatctacggtttaaaagcaaaatgttctgtccgagtccaaggccctttgtttgaccggacataagggcccacagccagcatcttgaagtcggagttcccagggccccctgggtcatctgacgctaactcgataactcgcaggcagtctgtcctgagagtctgtcacctactgctctgaatagccctccctgtgattaaccactttgctgccagaacgtcctttgcccacacgctgccgtgggtcagtcggggtcgccctctgccctcttcacctcttgtctttaggctcgttaggttctctcatctttggaaggtccgcatttgctgcaagacccctccgttggtttgctcttaaattcttgagggacaggcgggcggttttgcgggaacggacgtctgggggcgtggaggttgctctgctcgctcaccggacgctcatcagatgctgactttggtgcagagaggttacgcgcgtaacatgacctggcagtttttgcctttagcactgtcgttttgggttttgatgcttttctcgctgcgcggcgtgctttaatcctgaaagagctaagtgtcctttgcggtctttctacgaatgttttgtaatggcgcgactacactgttttgtagacacagccctccccaagatgcgtgggcgctcagcacgggcaccctcagtgtctgctgacctgctgcttctggaactgctcaggcgctctgggttggccttctcttcgaccagaatcccattcagggcattttcaggggacaccgcatggcagcccactctgattcagtaatgtgaactgttgaactcagatctgcccatgagctctgtgcataaatgtctccagaatcccggggtgggcctctcccgccattttcacgttcatgaaaaattattttaaaagagggagctgaagactactggtgcttttgttaacacttttctcttactggttgatgtgaaagagttaaagctaaaacaccaaatattaactcttcctcctcaagtgtctccaggaactagatgttgaggccaccctcgttaagcaccttctgaatcaaggtccttcaacccgtgagttgatcccaagaccagcctacaccatgaggccaggggtgcggtgcaggccaactgcgtggccccttggcaccacttggcagacctcggtgcttgtgttggggagccgaggctcctttgaactctagagactttggggacaatctgggggggggcgggcgcgggagagggca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//
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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