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Previous release (v1)
2025-12-09 09:59:57, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_042481853 1336 bp mRNA linear VRT 19-JUL-2021
DEFINITION PREDICTED: Plectropomus leopardus homeobox protein Hox-B8-like
(LOC121938676), mRNA.
ACCESSION XM_042481853
VERSION XM_042481853.1
DBLINK BioProject: PRJNA744194
KEYWORDS RefSeq; includes ab initio.
SOURCE Plectropomus leopardus (leopard coralgrouper)
ORGANISM Plectropomus leopardus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae;
Epinephelinae; Epinephelini; Plectropomus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024633717.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Plectropomus leopardus Annotation
Release 100
Annotation Version :: 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 9.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 14% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..1336
/organism="Plectropomus leopardus"
/mol_type="mRNA"
/isolate="mb"
/db_xref="taxon:160734"
/chromosome="Unknown"
/tissue_type="muscle"
gene 1..1336
/gene="LOC121938676"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 30 Proteins, and 94% coverage of
the annotated genomic feature by RNAseq alignments"
/db_xref="GeneID:121938676"
CDS 1..489
/gene="LOC121938676"
/codon_start=1
/product="homeobox protein Hox-B8-like"
/protein_id="XP_042337787.1"
/db_xref="GeneID:121938676"
/translation="
MLESSLASNNASLPCLPLSSPPPPPVAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPSSKSEQEAVERERREKELRDGSGSGGGEGGGGGAEGGGGGGSVAVAGTAGPQGSVSEDCCEKTHKQM"
misc_feature 91..261
/gene="LOC121938676"
/note="Region: Homeodomain; pfam00046"
/db_xref="CDD:459649"
ORIGIN
atgttggagtctagtttggcttcgaataatgcctctctcccgtgtctccccctctcctcaccccctcctcccccagtagctgcgggcaggaggcggggtcggcagacctacagccgctaccagaccctagagctggagaaggagttcctcttcaacccctatctgacccggaaacgccgcatcgaggtgtcgcacgcgctggctctgacggagcggcaggtaaagatctggttccagaaccggaggatgaagtggaagaaggagaacaacaaggacaagttcccgagcagcaagagcgagcaggaggcggtggagagggagcgcagggagaaggagctgcgggatggtagcgggagcggaggcggagagggtggcggcggaggtgctgaagggggaggaggaggcggctcagtggcggtggcgggcacggcggggccccagggctccgtaagtgaggattgctgcgagaaaacccacaagcaaatgtaaggaggaaagcggagaagttataaagggaaggtaggcggaggagggagtgagagatggacaggagggggtgagggtgggtgcgggtgggcgaggggctgtttttgtcttaattgaagccattggactgctccgttgtctccacaattcaattgatggaaaggaacttgagtctccaaaaaaatggccactggcgagccggacggactggaggggcctcgcgcctctgtctcctgactgtacaaaccgcgggaaagaaaaaaaagaagaaaaaaagaaacattgaagcaagaactaaaaaaaaaaacacaactgatgagggcggggtttatccatccaagtcaaacaaacatagtctactctagtgtttaaaacaaacaaaaaaaaaaagaaagaaaaatgatagcttcctttctttgtggaacaattatcgtggaaacatttctatattgttagaagtttatcattaacaattttatctttggcagctgtatagtttttaagttaaaaaaatgatgatggtgcactttttactgtacttctcacttctatgttgttgatgttgttatggcaatgattgattgattgattgattgattgatgataatgatgatgatgatgatgatgatgatgaagatgatgatgataatgatgatgacgtagcaattaatgaaatttccaacaacatgaaactgcctatttatgccgttttagtaggtcgggtctcttttttacacactctaattgtcgtttctcgttttagtttgttttttgatcgatggtgtttgttttatgttgtcttcctttttctcttttttgggtaaaaagcatgcgcacagtgcagattaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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