2025-04-04 04:38:30, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_042318301 1686 bp mRNA linear VRT 08-JUL-2021 DEFINITION PREDICTED: Oncorhynchus tshawytscha uncharacterized LOC121845933 (LOC121845933), transcript variant X11, mRNA. ACCESSION XM_042318301 VERSION XM_042318301.1 DBLINK BioProject: PRJNA432585 KEYWORDS RefSeq. SOURCE Oncorhynchus tshawytscha (Chinook salmon) ORGANISM Oncorhynchus tshawytscha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024609799.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oncorhynchus tshawytscha Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1686 /organism="Oncorhynchus tshawytscha" /mol_type="mRNA" /isolate="Ot180627B" /db_xref="taxon:74940" /chromosome="Unknown" /sex="male" /tissue_type="blood" /dev_stage="Mature" /geo_loc_name="Canada: British Columbia, Capilano River" gene 1..1686 /gene="LOC121845933" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:121845933" CDS 761..1489 /gene="LOC121845933" /codon_start=1 /product="uncharacterized protein LOC121845933 isoform X5" /protein_id="XP_042174235.1" /db_xref="GeneID:121845933" /translation="
MECSNTVYNVIMECSNTVYKVIMECSNTVYNVIMECSNTVYKVIMECSNTVYNVIMECSNTVYKVIMECSNTVYKVIMECSNTVYNVIMECSNTVYKVIMECSNTVYKVIMECSNTVYKVIMECSNTVYKVIMECSNTVYKVIMECSNTVYKVIMECSNTVYNVIMECSNTVYKVIMECSNTVYKVIMECSNTVYKVIMECSNTVYNVIMECSNTVYKVIMDCSNTVYKVIMECSNTVYNGV"
ORIGIN
ctaactgtaagtctctctggatcagagtgtctgctaaatgactcactaactgtaagtctctctggatcagagtgtctgctaaattactaaaatgtcaatgtagaaaatgtacgttcaacactctgtgtatacaaccacttaacttgtcatggagtgttctaacactgtgtataatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataatgtgataatggagtgttctaacactgtgtataatgtgataatggagcgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataacactgtgtataatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataacactgtgtataatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacgctgtacaatgtgataatggagtgttctaacactgtgtaatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtataaggtgataatggagtgttctaacactgtgtataatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataatgtgataatggagtgttctaacacggtgtataaggtgataatggattgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataatggagtgtaataacactgtgtataatgtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctaacactgtgtataaggtgataatggagtgttctcacactgtgtataaggtgttaatggccagctacagttgttccctggtgacctgtatcattgtgt
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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