LOCUS       XM_040548948            5866 bp    mRNA    linear   VRT 08-APR-2021
DEFINITION  PREDICTED: Cygnus olor testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), transcript variant X4, mRNA.
ACCESSION   XM_040548948
VERSION     XM_040548948.1
DBLINK      BioProject: PRJNA642912
KEYWORDS    RefSeq.
SOURCE      Cygnus olor (mute swan)
  ORGANISM  Cygnus olor
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes;
            Anatidae; Anserinae; Cygnus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_049170.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cygnus olor Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5866
                     /organism="Cygnus olor"
                     /mol_type="mRNA"
                     /isolate="bCygOlo1"
                     /db_xref="taxon:8869"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /geo_loc_name="Germany: Mainau"
                     /lat_lon="50.149850 N 11.063270 E"
                     /collection_date="2015-07-01"
                     /collected_by="Robert Kraus"
     gene            1..5866
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:121065836"
     CDS             218..2491
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="protein TOPAZ1 isoform X4"
                     /protein_id="XP_040404882.1"
                     /db_xref="GeneID:121065836"
                     /translation="

MLNHAENSQDLAIKATDIKTHNSSSRNSPLRGVTEDSFEDGQLRKQDGFLKSFEINEKFRFADGVAALEPEEKGEAEKSDCKYTDLMNCELLSRLPLHVPNVKVLSESTVLKARKNDCTFSGKGLSLPLQNHGDSEPWTTDKNAKASHSVQQILGMIDLPRKYCRYYFMTLRGCERAKCWFRHVPEQRHEKICMAILKTYISIKEKGLLKRAVQIFVRYYREVTPGEDFAFQVLNDLLVCLLKNCLLQEVFQILRVAVQVNTLPAVDVLLKVFEHVASLNIRNAVPKLISTFRKLIDAGMFLEFEHFNYITKLLQQLQVSSQEINVVLNIKSRFQERHFKSNWLFDCNLVMVEIQHCKEKNDWSKMGTLYVNARTGCEHFDDLQKLSLCIAEILTRDSEKDRPGVPFCDFADAVITSLTCNEADRIFIGRTGISVMNSYRKVLQWRKGRTVLDKLHELQINFTVLKGLIGAENLASRCQIVNNAAEIFLKTGSLDGATWVLRESEWTTNTPLWPCDEEDILNRHNLLCSLVHKYMRQSLYRQALEVLQNLPGFQNSSDTVDVSQYSCVFNLLIKACFESKNLGVSSSAVDFMLSKNIAVDFFLLRGLITGLGRSCLWSKARTYYKTALSLGCYLPLEGNLHHKILPIPFYVSEVEMLLAIELFLVSNASDIQSPGATTQSLQIILKRCEDQTVQSNSDYQAGMERLSLAAHVSDPKLFLKRMTVNVNMEEVYSLEHTSALKWLQENMKWAGKVWLFQ"

     misc_feature    1277..1804
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      

ctggggggcggcggggggcgtgaggcggggaggtgcggggctgctgcctccttctccctcccgctgctcccggagccgggtggtggccgtgggtggtggcctgtcgcccccgctgaggtgagggctgaggcgggaagaggtggtgctcgccttcgggtctggggcagccggcgtgcgggtaggggtgcgcagagacattacagtacaggactctggaatgttgaatcatgctgaaaattcacaggatttggcaataaaagctacagatattaaaacccataattcatccagtagaaacagtcctttgcgaggtgttactgaggactcttttgaagatgggcaactgagaaagcaagatggatttctaaagagttttgaaattaatgaaaagttcaggtttgcagacggagtggctgctcttgaaccggaagaaaaaggtgaagcagaaaaaagtgactgtaaatacacagaccttatgaactgtgagctgctctcaagactgccactgcatgtcccgaacgtaaaagtcctcagtgaaagtacagtgctgaaagccaggaagaacgattgtacattttcaggaaaaggcctttcactgccattgcaaaaccatggagattctgagccatggacgacagacaaaaatgcaaaagcttctcattcagtccagcagatcctggggatgattgatttgccccgtaaatattgcagatactatttcatgactttgcgtggctgtgaaagggcaaaatgttggtttcggcatgttcccgaacaaagacatgaaaagatttgcatggcaatacttaagacatacattagtatcaaagaaaaaggccttctaaaacgtgcagtccaaatatttgtcaggtattacagagaagttactcctggtgaggattttgcttttcaagtgctgaatgatcttctcgtttgtttgctcaagaactgtttgttgcaagaagtatttcagatactgcgtgtagctgtacaggttaatacgctgccggctgtggatgttcttctgaaagttttcgagcacgtggcttctttgaatataagaaatgctgtgcctaaattaatcagtacctttcgtaagctcattgatgctggcatgtttcttgagtttgaacattttaattacattactaaactccttcaacaattgcaagtttccagccaggaaataaatgttgttttgaacataaaatccagatttcaggaaagacattttaaaagcaactggctctttgactgcaatttggtaatggttgaaattcagcattgcaaggaaaaaaatgattggagtaagatgggaactttgtatgttaatgcaagaaccggatgtgaacattttgatgaccttcagaaattgtctttatgtattgctgaaatactaacgagagattctgagaaagacagaccaggagttcctttttgcgattttgctgatgcagtaataacaagtttgacatgtaatgaagcagacaggattttcattggaaggactggcataagcgtgatgaattcttatcgcaaagtactacagtggagaaagggaaggacggttttggataaattgcatgagctacagataaattttacagtcttgaaaggacttattggtgcagagaacttagcatcaagatgtcaaattgttaataatgctgcagaaatttttcttaaaactggaagtttggatggagcgacatgggtattgagagagtcagaatggaccacgaatacaccattgtggccctgtgatgaagaggacatcctcaatcgacataatctgttatgttcactagtgcacaagtacatgaggcagagtttatacaggcaggcattggaagttcttcagaatttaccaggtttccaaaatagttctgatactgttgatgtttctcagtacagctgcgtttttaacctgctgataaaagcctgttttgagagcaagaaccttggggtctcatcttctgcagtagacttcatgctttcaaaaaatatagctgttgatttttttctacttagaggattaatcacaggtttgggaagaagttgtttgtggagtaaagctagaacctactacaaaactgctttatcattgggttgctacctgccgctagagggaaatttacatcacaaaattttgccaattcctttttacgtgtctgaggttgagatgctgttggccattgaattattcctcgtttcaaatgccagcgatattcaaagtccaggggctactactcagtctcttcaaataatactgaaaagatgtgaagaccagacagttcagagtaacagtgactatcaagcaggaatggagagacttagcctggctgctcatgtatctgatccaaagctttttcttaagcgtatgacagtgaatgttaatatggaagaagtttacagcttggagcatacatctgctctaaaatggcttcaggagaatatgaaatgggctggaaaggtctggctgtttcagtagtcattaattaataaataaagacttcaggggagggtgttcagtggtttaagtaatcattgttaaaactaataaaaattactaaaggtatttgccactgtgttcagccttattgtcttagagcaaggcttcaaaactcaagttgtgtttttaagtacttacgttgatgataatgcagatagtaggacaaaaagagcaatttttttcctaactatatggcttacgtaggtgtattttaatgacatcactatatgacaagaaagttctagcctcagaatctgcattctcctttttaaggagaacatagcactagctgttactactttcccaacaagtgctattatgtaggtaacagctttgattgagtgtttctgctgttccccagtgagaggttttccacattgtttcataatttgtaaaagtaatacgttttcttttgtcttccttacagtaccttgtgatattgtcccacccaaatgaaggccccttacttaggccttcatttccttactccaaacacccagtaaaaagcagtgagaataaagtatcttcaaaatcatttgccgcatgagacatgcctgacttaggatacctttccttcacagaactgagagtctatgcaagttgctcacagctgaaggtttagttgtgtctagataacagcttgtatatggcttcacatttgtgtgtctgtgcgttttcactgaaaaggaaaactttctctctcccttgatggttgctcttagtgggaagtgttttttgccttcacatctgataattgactttaccatttttaagtttctgccaacagtatgacaagatggagccttgtagcaagctggttctagcattcctatttcttcaggaattcttttttcacctgcaaatcatgaatcatatctggggcatggaatatttaagtcagactttatttacggatctgcaacctgaagaggaaggactgaatggcaaatcaatgggacctttgtcaaagctgttacttgcccaagctctccacttctgtagcgttaagatctccagtaccaaccttcacagacataacatgcagctgttttggtcctgctctccattcccattagagcttcttgtgctgagaatttctgctctcttgggtatggaagcttacgtgttttttcaaagcctgttccatcattagtgacagccaaggtggtggtgtaaaccctcagttttttaaaaatctttccctctgaggcagcatgagtctcagttctcacagcattactgcaggtgttctttgagtcatgaagctatcatgattttagagctggatggttgttgagggttttggagtggtgttggtgttttattgtttggggtgaggggggtgttactctagtcttggggtccgtctcgttaatctgatgtcatttatctgatctttggttgttgtatggccctcttcatctgataccactgctcatccagtctgtcttggaactgctactggaggaaagaagattcgagtctgatgacctctgagatcactgtcccacctgtacagaaaaatacagggatagaagctcttaagtttttgcaacttatcatgcttctgtagggatctcacctgctttccttacaaaaactagcaggttcagtagtaaaatcacatggcatttctttaaaacccttgtccttgagaaacaattggtgctagttcaaacagactttgggttctaccacttggtattgtctgagatggctctcccatttgcaaggctgtccacttagtcaaatccactagcattctgctgctttgttccctagtagctgaatgctggatatgaagcgatcgggtttcagatgagaaatctgaactgacattcttccagccactccagcattacaggcaagagcaattttggagatttcaacaaattaaaactggcaatgtagtcaacagcgagaaactaagtcatttttgctaattacgtcttgtaagatcctttgtagcttaatcttccttggaattagtcagaagctatctgaacctcagctaaatcccacatttctgtaagcagtaccagatgtggctaatactgtttgagagatgcaggaggacaaaattctcttaataatccttatggcttcaaaagttgggatgttctagggacagcattatttttctgttataagtaaccttgaatttttgcttagagcagccccagaaaaaaaaaaaaatccaaatgttgatttattcttcagagattagccatcgactttccaggttagcttggaactgtggaaagtttgtgcaatgttttggctccatctcctgagtatcatcttcagctgatgtgatgcaatctcagtcatattttatattaacaggcaaagcaacctccccacatcactgctaagaagttctgttaaaaccagtgggtgcatcaggatccagctgtttctgtcaatacagaaacagctccctgtcaccatgataaaccaataggcaatttaaatagctttactgtaagtcttttatctcacactttcatacttcctgggtctttgaaatactgtacaaatccggtcattttgttgtgtatcaaaatttcagaaaggtttcttgatcagcgttcttagtacccttttggtgacagaaattccatgtgctaaagggacatagcaagtgaggaaaactttgttgtggaatggaaatgctcctgaaaagatgaagaaatattccaaagattaaagttaaggacaacagagaagatgcatttttgcagttagccaccgtagaaaatatccctctttttgcttttccccttatacaagttactgtttcttaatagctgaaagaactctgttagagaggagcaactcatttgatagattttttttttttgccatatatatgagacaaaaggtatacttaggtgtttggagatagagacagtgcttcaaaaaaaatcctatgctgcactcaatagctaaatctagacaaagctatccttattcagtatgttgttagttaatgatgtatgagaaatgccctttttcttcatggaaatcttcaattttcactgatcacaagctatgctcttggaaacatgacttttgttaggtacggacagtttcttgtaactaaagcagaataacgtagtttggaagacttgcaacgattttattttgaagccttgatagttttgagagttttttaacccacatcttggatggaggtgagaagctggaggtagaagcttgatagttttacgatgttttataatgtagtaaaaggggggatatcattttggaggaattgttaagatgttaataaatgttgggttttattctttatgtgaaatatccaaaacacctgtgaatcagtgttgtcat

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