LOCUS       XM_038300366            1915 bp    mRNA    linear   VRT 22-DEC-2020
DEFINITION  PREDICTED: Cyprinodon tularosa testis and ovary specific PAZ domain
            containing 1 (topaz1), mRNA.
ACCESSION   XM_038300366
VERSION     XM_038300366.1
DBLINK      BioProject: PRJNA686119
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cyprinodon tularosa
  ORGANISM  Cyprinodon tularosa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
            Cyprinodontidae; Cyprinodon.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024039173.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cyprinodon tularosa Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Cyprinodon tularosa"
                     /mol_type="mRNA"
                     /strain="WSP-4"
                     /db_xref="taxon:77115"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="Skeletal Tissue"
                     /dev_stage="adult"
                     /geo_loc_name="USA: New Mexico"
     gene            1..1915
                     /gene="topaz1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 98% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:119793277"
     CDS             102..1841
                     /gene="topaz1"
                     /codon_start=1
                     /product="protein TOPAZ1"
                     /protein_id="XP_038156294.1"
                     /db_xref="GeneID:119793277"
                     /translation="

MCRFLHLPREGDEKMCVDTVARFSNHLASLQRAGAVFAGYYQSSPPGEYFSRPVYLSLLWALLKAGMVSSIFSVLRVSLVYNLVPGHDFLLALFSYVRDKALVGFIPELLQHTIKMVSSGLELNLDCIENVKNTPMFQQTAHQISHAASLGSKNLSACPPNPDFLNLVHGNVEIQLCAKQEDWRRMGEVYRSICQLSQHPIHVERITGQIAIALLAENKNKVALPFAAFVESVCKNEDKDDSVVRSFVGRIGVSLMLRYHKNHHWHKGCKVVQVLSSLKMDYVTLKSLFGNEDGASPCFLITVAAELFLMSGMAEAALNTFREHGWFLGSWARPSKPADLESRTNVQIQLGRKISIRDTLEVLCNLPGVKEPIDSIDISRYAPHFTSHLQMCLETERHTFLPVASDTVEFMLSKGLAVDPLLLQTTIEKLGRQNHWLRAREVFKHSLSVGYYPEVSAGPGLMELTVPCSLGEVELVLSLEMFVALNASVILLSDTVTPTLSITLKRTHNSEVDYISAGTRLLLASSLPQPKLDVHYTNVNVSQEQVFRLDVSSARRWLHRNHLWASELWTPRARCLDQN"

     misc_feature    621..1139
                     /gene="topaz1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      

cattaaaaaaaaccctactaaatggaacagatttttggcggcagaaatccaatgattattgcagaaattacttctgtgaatggcagtcatgcgacctcaaaatgtgtcgcttcctgcatctacctcgcgaaggggacgagaagatgtgtgtcgacacggttgcaaggttttccaatcatctggcatcccttcagcgagcaggagctgtgtttgcaggatactaccaaagcagcccaccaggggagtatttctccaggcctgtgtacctgtccctgctctgggctctgctcaaagccggcatggtgtctagcatcttctcagtgcttcgtgtcagcttggtctacaatctggtgccgggccatgacttcctgctggctctcttcagctacgtcagagacaaggctctagtcggctttattccagagctactgcaacacacaatcaagatggtcagtagtggtttggagctgaacttggactgcatcgaaaatgtaaaaaacactcccatgtttcagcagacggcccatcagatttcacatgcagcttcacttggcagcaaaaacctgtctgcctgcccacctaatccagacttcctgaatttagtgcatgggaatgtggaaatccagctctgtgccaaacaggaggattggaggcggatgggtgaggtgtataggtccatctgccagctgagccaacaccccatccacgtggagcgcatcaccggccagatcgccatagccctgctggctgagaacaaaaacaaggtggcgctgcccttcgctgcttttgttgaatcagtgtgtaaaaatgaagataaggacgacagcgtggtgaggagttttgttggcaggatcggagtctctttgatgttaagataccacaaaaaccatcattggcataagggctgcaaagtggtgcaggtgctgtccagtttgaaaatggactacgtgacactgaagagcttatttgggaacgaggacggagcatcgccctgtttcctgatcaccgtggctgcagagctcttcctgatgagtggaatggcggaggcagcgctgaacacgttcagagagcatggctggttcctcggttcatgggcccggccatctaagcccgctgatctagagagtcggactaatgttcagatccaactggggaggaaaatctctatcagggacacattagaagtgctctgtaacctgccaggagtcaaggaacccatcgactcgatcgacatctccaggtacgctcctcactttacgtctcacctccaaatgtgtttggagacggagagacacacatttcttcctgtagcgtccgacacggtggagttcatgctatctaaagggctggctgtcgatcccctgctgctgcagacgacgatcgagaaacttggccgacagaaccattggctgcgggcacgggaagtcttcaaacactcccttagtgtgggctactatccagaagtgtctgcagggcccggtttgatggagctgaccgtcccctgctcgcttggagaggtggagctcgttctcagcttggagatgtttgtggccctgaatgcatcggtcatccttctgtctgacaccgtcacccccaccctcagcattactctgaagaggactcataactctgaggtggattacatctcagcagggacccggctcctcttagcatcgtcccttcctcagcccaaactggacgtccattacaccaacgttaacgtctcccaggaacaggtgttcaggctggacgtttccagtgcgcggcgctggctccacagaaatcacctgtgggcctctgagctgtggactccccgagctcgatgtttagaccaaaactgagcgaggtgagtagtcagcattatgtacagcatcagtccgctctcatgtagaacactgtttgttataccaataac

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