2024-04-20 10:13:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037827738 4112 bp mRNA linear MAM 19-NOV-2020 DEFINITION PREDICTED: Choloepus didactylus protein argonaute-3 (LOC119527573), transcript variant X4, mRNA. ACCESSION XM_037827738 VERSION XM_037827738.1 DBLINK BioProject: PRJNA678727 KEYWORDS RefSeq. SOURCE Choloepus didactylus (southern two-toed sloth) ORGANISM Choloepus didactylus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Pilosa; Folivora; Megalonychidae; Choloepus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051308.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Choloepus didactylus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4112 /organism="Choloepus didactylus" /mol_type="mRNA" /isolate="mChoDid1" /db_xref="taxon:27675" /chromosome="2" /sex="male" /tissue_type="spleen" /dev_stage="adult" /country="Germany: Tierpark, Berlin" /lat_lon="52.520008 N 13.404954 E" /collection_date="03-Mar-2014" /collected_by="Gudrun Wibbelt" gene 1..4112 /gene="LOC119527573" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:119527573" CDS 155..2035 /gene="LOC119527573" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_037683666.1" /db_xref="GeneID:119527573" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 155..496 /gene="LOC119527573" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(290..292,335..337,377..379,389..391,443..445, 464..466,470..472) /gene="LOC119527573" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 629..1906 /gene="LOC119527573" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1040..1042,1052..1054,1088..1099,1106..1108, 1130..1132,1139..1141,1151..1153,1163..1165) /gene="LOC119527573" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1244..1246,1250..1252,1460..1462,1874..1876) /gene="LOC119527573" /note="active site" /db_xref="CDD:240015" ORIGIN
agtgtggtttggattccatcaatctgttcggcctgccatgtggaaaatgatgcttaacattgatgaaagcctttacacaagacttgtgctggaatgctgctaaacatgaatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatatcgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacaatatttcagagaaaagtatactcttcagctgaagtatccacacctcccctgtctgcaagtggggcaggagcagaaacatacctacctgccactagaagtctgtaatattgtggcagggcaacgatgtatcaagaaactaacagacaatcagacttccactatgatcaaggcaacagcaagatctgcaccagatcgacaagaagaaattagtagattggtaagaagtgcaaactatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtgaccggacgtgtacttccagcaccgatgctacagtatggaggacggaataggaccgtagcaacaccaagccatggagtatgggacatgcgagggaaacagttccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatactgaagggtttcacggaccagctgcgtaagatttctaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactctgggctacagctcattattgtcatcctgccagggaagacgccagtgtatgcggaagtgaaacgtgtaggtgacacacttttgggtatggctacacagtgtgttcaagtcaagaatgtaataaaaacatctcctcaaactctttcaaacctgtgcctaaagataaatgttaaacttggagggataaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgttactcatccacctgccggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgcgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggttcgggaacttcttattcagttttataagtcaactcggttcaaacctactcgtatcatcttttatcgagatggtgtttcagagggacagtttagacaggtattatattatgaacttctagcaatccgtgaagcctgcatcagtttggagaaagactatcaacctggaataacttacattgtagttcagaagaggcatcatactcgattattttgcgctgacaggacagaacgggtaggaagaagcggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgcccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttacgtgcgctgtacacgatctgtttctatacccgcaccagcgtattatgctcacctggtggcattcagagccagatatcatcttgtggacaaagaacatgacagtgctgaaggaagtcatgtttcaggacagagcaatgggcgagatccacaagcacttgccaaggccgtacagattcaccaagataccttacgtacaatgtactttgcttaaaaagtccaagtatattctttgagaggaagaactgaaagatgaatggattacaacgtatgtttccagtggagtcggttgagtggagatgcctccagccatacagaaaccaacactgtgtgggggccagagtctgatctttatgttgataaaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcagtctcctgtaggaagtattgcagttgttttgttttcacttcttgtagtctgacccttctaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaagtgaagaaaaagtaaatgatggtctaaaaacacacacctacatgaataatcaaaatgattattcacaattatgtgtgcaaaaaattaatatgcatttgtgtattcttgtaaaaggtgtctgtatattttaaatatatacatgcatacttcatatgcatatatatctagatcatacattgataatagatatatatgtatctgtgtatatatttttataattcattccattggggaattgtctttcccttttattatctacaccaccacctttatttctctatctcccttgccttcatcaccttcatttttttacctagtgctaacagtgacattcaaatattcatatatctgaatcatttgaatgtgaagtatggcaaactagatttttatttttattttggataccccactcctttattttagccaactgctgtctcatgtctcgtacataattctgagtcctcaactcttgatattgctttcttaagaaacaaaattattttgtatatgtgtttttgtgagcatgtgtgtgtctctctgaacttacatttgccatttgtgcaatgtgtaaataagcaatagcaacctaaactgttctttttctttagttaaagctgctgtaaaacctcatcagaagttgtaactctttgtctctgataagggatatatattctaaagccctctgtttctgtgggttatacatggaaatcccttagagcttttataaagggtaaatattttaaaagattagaattctgtagggttgaggcctctgaaattgggtgagagaggaaagcaggtggttggggtttgggggttatttgctggtttacttgctgcctctcataccttaatgtgattttcatatatatatttttatatatatgtgtgtatatatatatatataaacatatatgtatgtgttttgaagtatagcttcctttccttttgtatttattagaatagtgctttaataattatagaacatattggcaacattttttatagaaatatagtcatgtttattttaagaactgacaacttgtttttgctatcttttagtgcaataagcagttttaaaggaaagcttgtctgtttgacatctttaccacagatagtgggaagaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaattttcaaatttaaagtatgtcttttaaaaaccataatggaaattaaattgcctaaatcagtctgaccttgaatattagaaataaagttgaactttgattcaagaaatgacagtaagcaacttaaggtttggaagatacttaaattatttgaaaatatatcatgtattttgaagagtcatactgtctagatgcccatttcatttactaaaaatgaatcaggaagatgcaaggtgatattttcaaaacattttttgctaatttatcaccagtgtaactttctttttaaaattagggtgttggtgacaaaaggaagtgagaactttgtacattttaaatgcgtttaatcactgaaatatggaagaaagctttgtaaaacttcttttattgattccactttaagatataaaagtactataaagctgtcaaaaccgagtttatcagtaacattgtattccaggggagctttgcactttgtagcatgaaaatagctttttcactctttcgttttgttttgttttgttttgtgtggggttttttttggttgtttttt
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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