2024-04-26 17:51:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037501342 4116 bp mRNA linear MAM 29-MAR-2023 DEFINITION PREDICTED: Talpa occidentalis protein argonaute-1 (LOC119237221), transcript variant X2, mRNA. ACCESSION XM_037501342 VERSION XM_037501342.1 DBLINK BioProject: PRJNA674757 KEYWORDS RefSeq. SOURCE Talpa occidentalis (Iberian mole) ORGANISM Talpa occidentalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Talpa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023605305.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_014898055.3-RS_2023_03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 03/24/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4116 /organism="Talpa occidentalis" /mol_type="mRNA" /isolate="TD23" /db_xref="taxon:50954" /chromosome="Unknown" /sex="male" /tissue_type="spleen" /dev_stage="adult" gene 1..4116 /gene="LOC119237221" /note="protein argonaute-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 17 Proteins" /db_xref="GeneID:119237221" CDS 202..2775 /gene="LOC119237221" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_037357239.1" /db_xref="GeneID:119237221" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 301..693 /gene="LOC119237221" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 721..873 /gene="LOC119237221" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 874..1236 /gene="LOC119237221" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1030..1032,1075..1077,1117..1119,1129..1131, 1183..1185,1204..1206,1210..1212) /gene="LOC119237221" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1369..2646 /gene="LOC119237221" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1780..1782,1792..1794,1828..1839,1846..1848, 1870..1872,1879..1881,1891..1893,1903..1905) /gene="LOC119237221" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1984..1986,1990..1992,2200..2202,2614..2616) /gene="LOC119237221" /note="active site" /db_xref="CDD:240015" polyA_site 4116 /gene="LOC119237221" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggcgctcgcggggggagctgctgcaggctccgcggcggcggctacggaggctgcgggggcggcggcgagcgcggccgggcttgggggggggagccgagcccggcccgggagcccgaggagctagagggagcggggtgcctgggcccctcacgctggacgccgcagtctccgggccgcctgacccccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcgcctacctgcccccactgcagcaggtgttccaagcaccccgtcgacctggcattggcactgtgggaaaaccaatcaagctcctggccaattactttgaggtggacatccctaagattgacgtctaccactacgaagtggatatcaagccggataagtgtcctcgcagagttaacagggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcctgtgtatgatggaaagaagaacatttacactgttacagcactgcccattggaaatgaacgggttgactttgaggtgactattcctggggaagggaaggatcgaatattcaaggtctccatcaagtggctagccatagtgagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttcccctggaatctgtgcaagccttggatgtggctatgagacatctggcatccatgaggtacacccccgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagctactgccttctacaaggcacagccggtgattgagttcatgtgtgaggtactggacatccggaacatagacgagcagcccaaacccctcacggactctcagcgtgtgcgcttcaccaaggagatcaagggcctgaaggtggaagtaacccactgtggacagatgaagaggaaataccgagtgtgtaatgttacccgccgccctgctagccatcagacgtttcccttgcaattggaaagtggacagaccgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaaatatccccacctgccctgcctgcaggttggacaggaacaaaagcatacctacctacccttagaggtctgtaacattgtggcggggcagcgctgcattaagaagctgactgataaccagacttcgaccatgataaaggctactgctagatcggccccagacagacaggaggagatcagccgtctgatgaagaatgccagctacaacctcgatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacagggagagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgctacacccaatcagggtgtctgggacatgcggggcaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctacggaagatttccaaggatgcagggatgcccatccagggtcagccttgcttctgcaaatacgcacagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattattgtcatcctgccagggaagacaccagtatatgctgaagtgaaacgtgttggagatacactattgggaatggctacacagtgtgtgcaagtgaagaacgtggtcaagacttcacctcagactctgtccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgctgtctttcaacagccagtgatattcctgggagcagatgttacacatcccccagcaggagatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgttactgtgctacagtgcgggtacagcgaccacggcaggagatcattgaagacttatcctacatggtgcgtgagctcctcatccagttctataagtcaacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggtcagctcccccagatcctccactatgagctgctggccattcgtgatgcatgcatcaaactggaaaaggactatcagcctgggatcacatacattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggcaacattccagctgggaccactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggacgacaaccgtttcacagcagatgagctccagatcttgacgtaccagttgtgccacacttatgtacgatgtacacgctccgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctggtggacaaggaacatgacagtggagaggggagccacatatctgggcagagcaatgggcgggacccccaggccctggccaaagctgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagcttttcaagccccaagagctgtgccgcccaaatccagaggaagcagggaggagggaagtggggtaggggggagtgcagaaggccttgtttccttctacagaggggacaaaaaggtggggaacagggccagtaagccagaccaccagccagaaatctctgatatccacctcatgccccccacccctcaccccatcttgtcatatctggccctgaccccactggaccaaaaggggcagcactggtgcccaccatacacacaggtgtttcatgtgactcacagtgctaaagactcacgcctgacagcttggtaaggttggctctgcagccctgtggacaaaagctggtaggtttgagtttgatactttagatgggaaagtgagggacttgagacagtgggtgggagaagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaagaaaaatgaaacaagacccagatcaatattttaggatactagatgttttaatgggttgagaatccagtttataggaagatttttaatgctaatggttttggttgctcctcccccagctgccaccccctacccttaattcctttctctccaccttttctatcctaccttacacctcccagacagatatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctgctggtgggcaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttcattggggggagggggtggggagggagaggagttaggtagggaataaaaagccctaacccaacaggcctccagacagagctccagctatttgcattcgaaggttttgacttccatattcattgagcttttaaaaagatcacaacctcaagatggttaaaatccattgacatttgcactttcagactcaagtctaggagctgctgagatgactggccccggctttccatgtaggcttccttttctccctatcttcattcctccccagcctcccgggtctggagctactttcaaagcatttctcattcttggcttcttttttccctgatggtcaactctcttatatttcaatatttcttaactgggatatcttataacaaaagatccttatgtctaaaaagtaagaaaagaagaacaaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggaaattcctcccgtgcccaatgagtttacatcccagaaacattgagccatcagaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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